Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS17695 and CA265_RS17700 overlap by 4 nucleotides CA265_RS17700 and CA265_RS17705 are separated by 466 nucleotides
CA265_RS17695: CA265_RS17695 - hypothetical protein, at 4,413,123 to 4,414,238
_RS17695
CA265_RS17700: CA265_RS17700 - hypothetical protein, at 4,414,235 to 4,417,033
_RS17700
CA265_RS17705: CA265_RS17705 - hypothetical protein, at 4,417,500 to 4,419,500
_RS17705
Position (kb) 4414
4415
4416
4417
4418 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4413.263 kb on - strand, within CA265_RS17695 at 4413.264 kb on + strand, within CA265_RS17695 at 4413.265 kb on - strand, within CA265_RS17695 at 4413.358 kb on + strand, within CA265_RS17695 at 4413.375 kb on - strand, within CA265_RS17695 at 4413.375 kb on - strand, within CA265_RS17695 at 4413.379 kb on + strand, within CA265_RS17695 at 4413.382 kb on + strand, within CA265_RS17695 at 4413.387 kb on + strand, within CA265_RS17695 at 4413.403 kb on + strand, within CA265_RS17695 at 4413.406 kb on + strand, within CA265_RS17695 at 4413.407 kb on - strand, within CA265_RS17695 at 4413.440 kb on - strand, within CA265_RS17695 at 4413.492 kb on + strand, within CA265_RS17695 at 4413.503 kb on - strand, within CA265_RS17695 at 4413.534 kb on + strand, within CA265_RS17695 at 4413.538 kb on + strand, within CA265_RS17695 at 4413.568 kb on + strand, within CA265_RS17695 at 4413.577 kb on + strand, within CA265_RS17695 at 4413.578 kb on - strand, within CA265_RS17695 at 4413.651 kb on + strand, within CA265_RS17695 at 4413.690 kb on - strand, within CA265_RS17695 at 4413.707 kb on + strand, within CA265_RS17695 at 4413.815 kb on - strand, within CA265_RS17695 at 4413.898 kb on + strand, within CA265_RS17695 at 4413.908 kb on + strand, within CA265_RS17695 at 4413.965 kb on + strand, within CA265_RS17695 at 4414.029 kb on - strand, within CA265_RS17695 at 4414.065 kb on - strand, within CA265_RS17695 at 4414.110 kb on - strand, within CA265_RS17695 at 4414.110 kb on - strand, within CA265_RS17695 at 4414.185 kb on - strand at 4414.196 kb on - strand at 4414.201 kb on + strand at 4414.284 kb on + strand at 4414.284 kb on + strand at 4414.285 kb on - strand at 4414.339 kb on + strand at 4414.340 kb on - strand at 4414.340 kb on - strand at 4414.346 kb on + strand at 4414.419 kb on - strand at 4414.493 kb on + strand at 4414.494 kb on - strand at 4414.502 kb on - strand at 4414.630 kb on + strand, within CA265_RS17700 at 4414.632 kb on + strand, within CA265_RS17700 at 4414.661 kb on + strand, within CA265_RS17700 at 4414.720 kb on + strand, within CA265_RS17700 at 4414.739 kb on + strand, within CA265_RS17700 at 4414.760 kb on - strand, within CA265_RS17700 at 4414.826 kb on + strand, within CA265_RS17700 at 4414.928 kb on - strand, within CA265_RS17700 at 4414.928 kb on - strand, within CA265_RS17700 at 4414.952 kb on + strand, within CA265_RS17700 at 4414.952 kb on + strand, within CA265_RS17700 at 4414.953 kb on - strand, within CA265_RS17700 at 4414.953 kb on - strand, within CA265_RS17700 at 4414.993 kb on - strand, within CA265_RS17700 at 4415.098 kb on + strand, within CA265_RS17700 at 4415.098 kb on + strand, within CA265_RS17700 at 4415.098 kb on + strand, within CA265_RS17700 at 4415.102 kb on + strand, within CA265_RS17700 at 4415.122 kb on - strand, within CA265_RS17700 at 4415.182 kb on - strand, within CA265_RS17700 at 4415.182 kb on - strand, within CA265_RS17700 at 4415.182 kb on - strand, within CA265_RS17700 at 4415.205 kb on + strand, within CA265_RS17700 at 4415.270 kb on - strand, within CA265_RS17700 at 4415.270 kb on - strand, within CA265_RS17700 at 4415.297 kb on + strand, within CA265_RS17700 at 4415.310 kb on + strand, within CA265_RS17700 at 4415.311 kb on - strand, within CA265_RS17700 at 4415.311 kb on - strand, within CA265_RS17700 at 4415.318 kb on - strand, within CA265_RS17700 at 4415.354 kb on + strand, within CA265_RS17700 at 4415.383 kb on + strand, within CA265_RS17700 at 4415.383 kb on + strand, within CA265_RS17700 at 4415.383 kb on + strand, within CA265_RS17700 at 4415.384 kb on - strand, within CA265_RS17700 at 4415.393 kb on + strand, within CA265_RS17700 at 4415.393 kb on + strand, within CA265_RS17700 at 4415.401 kb on + strand, within CA265_RS17700 at 4415.504 kb on + strand, within CA265_RS17700 at 4415.509 kb on + strand, within CA265_RS17700 at 4415.535 kb on + strand, within CA265_RS17700 at 4415.541 kb on + strand, within CA265_RS17700 at 4415.541 kb on + strand, within CA265_RS17700 at 4415.542 kb on - strand, within CA265_RS17700 at 4415.542 kb on - strand, within CA265_RS17700 at 4415.542 kb on - strand, within CA265_RS17700 at 4415.585 kb on - strand, within CA265_RS17700 at 4415.675 kb on + strand, within CA265_RS17700 at 4415.688 kb on + strand, within CA265_RS17700 at 4415.689 kb on - strand, within CA265_RS17700 at 4415.713 kb on + strand, within CA265_RS17700 at 4415.717 kb on + strand, within CA265_RS17700 at 4415.736 kb on + strand, within CA265_RS17700 at 4415.802 kb on + strand, within CA265_RS17700 at 4415.803 kb on - strand, within CA265_RS17700 at 4415.810 kb on + strand, within CA265_RS17700 at 4415.850 kb on + strand, within CA265_RS17700 at 4415.878 kb on + strand, within CA265_RS17700 at 4415.936 kb on + strand, within CA265_RS17700 at 4415.936 kb on + strand, within CA265_RS17700 at 4416.012 kb on + strand, within CA265_RS17700 at 4416.064 kb on + strand, within CA265_RS17700 at 4416.064 kb on + strand, within CA265_RS17700 at 4416.064 kb on + strand, within CA265_RS17700 at 4416.121 kb on - strand, within CA265_RS17700 at 4416.125 kb on + strand, within CA265_RS17700 at 4416.143 kb on + strand, within CA265_RS17700 at 4416.144 kb on - strand, within CA265_RS17700 at 4416.144 kb on - strand, within CA265_RS17700 at 4416.144 kb on - strand, within CA265_RS17700 at 4416.238 kb on + strand, within CA265_RS17700 at 4416.238 kb on + strand, within CA265_RS17700 at 4416.239 kb on - strand, within CA265_RS17700 at 4416.239 kb on - strand, within CA265_RS17700 at 4416.310 kb on + strand, within CA265_RS17700 at 4416.311 kb on - strand, within CA265_RS17700 at 4416.328 kb on - strand, within CA265_RS17700 at 4416.346 kb on + strand, within CA265_RS17700 at 4416.384 kb on - strand, within CA265_RS17700 at 4416.400 kb on - strand, within CA265_RS17700 at 4416.406 kb on + strand, within CA265_RS17700 at 4416.431 kb on - strand, within CA265_RS17700 at 4416.473 kb on + strand, within CA265_RS17700 at 4416.479 kb on + strand, within CA265_RS17700 at 4416.530 kb on + strand, within CA265_RS17700 at 4416.557 kb on + strand, within CA265_RS17700 at 4416.597 kb on + strand, within CA265_RS17700 at 4416.598 kb on - strand, within CA265_RS17700 at 4416.617 kb on + strand, within CA265_RS17700 at 4416.628 kb on + strand, within CA265_RS17700 at 4416.694 kb on + strand, within CA265_RS17700 at 4416.740 kb on + strand, within CA265_RS17700 at 4416.741 kb on - strand, within CA265_RS17700 at 4416.743 kb on + strand, within CA265_RS17700 at 4416.744 kb on - strand, within CA265_RS17700 at 4416.744 kb on - strand, within CA265_RS17700 at 4416.785 kb on - strand at 4416.862 kb on + strand at 4416.893 kb on + strand at 4416.965 kb on + strand at 4416.982 kb on - strand at 4417.022 kb on - strand at 4417.025 kb on - strand at 4417.326 kb on + strand at 4417.442 kb on + strand at 4417.496 kb on + strand at 4417.496 kb on + strand at 4417.497 kb on - strand at 4417.517 kb on + strand at 4417.653 kb on - strand at 4417.696 kb on - strand at 4417.708 kb on + strand, within CA265_RS17705 at 4417.709 kb on - strand, within CA265_RS17705 at 4417.709 kb on - strand, within CA265_RS17705 at 4417.832 kb on + strand, within CA265_RS17705 at 4417.844 kb on - strand at 4417.887 kb on + strand, within CA265_RS17705 at 4417.914 kb on - strand, within CA265_RS17705 at 4417.914 kb on - strand, within CA265_RS17705 at 4417.949 kb on + strand, within CA265_RS17705 at 4417.949 kb on + strand, within CA265_RS17705 at 4417.967 kb on + strand, within CA265_RS17705 at 4417.967 kb on + strand, within CA265_RS17705 at 4417.988 kb on + strand, within CA265_RS17705 at 4417.988 kb on + strand, within CA265_RS17705 at 4418.024 kb on + strand, within CA265_RS17705 at 4418.025 kb on - strand, within CA265_RS17705
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,413,263 - CA265_RS17695 0.13 +0.7 4,413,264 + CA265_RS17695 0.13 -0.4 4,413,265 - CA265_RS17695 0.13 +0.4 4,413,358 + CA265_RS17695 0.21 -0.4 4,413,375 - CA265_RS17695 0.23 -0.3 4,413,375 - CA265_RS17695 0.23 -2.6 4,413,379 + CA265_RS17695 0.23 -1.0 4,413,382 + CA265_RS17695 0.23 +0.2 4,413,387 + CA265_RS17695 0.24 +0.5 4,413,403 + CA265_RS17695 0.25 +0.0 4,413,406 + CA265_RS17695 0.25 +0.0 4,413,407 - CA265_RS17695 0.25 -0.6 4,413,440 - CA265_RS17695 0.28 -1.8 4,413,492 + CA265_RS17695 0.33 +0.3 4,413,503 - CA265_RS17695 0.34 -1.4 4,413,534 + CA265_RS17695 0.37 -0.3 4,413,538 + CA265_RS17695 0.37 -2.1 4,413,568 + CA265_RS17695 0.40 -2.1 4,413,577 + CA265_RS17695 0.41 -0.2 4,413,578 - CA265_RS17695 0.41 +0.2 4,413,651 + CA265_RS17695 0.47 -0.1 4,413,690 - CA265_RS17695 0.51 -1.6 4,413,707 + CA265_RS17695 0.52 -0.7 4,413,815 - CA265_RS17695 0.62 +1.1 4,413,898 + CA265_RS17695 0.69 -0.2 4,413,908 + CA265_RS17695 0.70 +0.5 4,413,965 + CA265_RS17695 0.75 +0.6 4,414,029 - CA265_RS17695 0.81 -0.7 4,414,065 - CA265_RS17695 0.84 -2.0 4,414,110 - CA265_RS17695 0.88 -1.8 4,414,110 - CA265_RS17695 0.88 -1.0 4,414,185 - -1.1 4,414,196 - -1.4 4,414,201 + +0.9 4,414,284 + +0.1 4,414,284 + +0.3 4,414,285 - +0.1 4,414,339 + +0.5 4,414,340 - +0.5 4,414,340 - +0.0 4,414,346 + -0.7 4,414,419 - +0.7 4,414,493 + -0.1 4,414,494 - +1.8 4,414,502 - -0.0 4,414,630 + CA265_RS17700 0.14 -0.2 4,414,632 + CA265_RS17700 0.14 +0.2 4,414,661 + CA265_RS17700 0.15 -0.1 4,414,720 + CA265_RS17700 0.17 -0.3 4,414,739 + CA265_RS17700 0.18 -0.2 4,414,760 - CA265_RS17700 0.19 +0.9 4,414,826 + CA265_RS17700 0.21 -1.8 4,414,928 - CA265_RS17700 0.25 -0.1 4,414,928 - CA265_RS17700 0.25 -0.5 4,414,952 + CA265_RS17700 0.26 -0.7 4,414,952 + CA265_RS17700 0.26 +0.3 4,414,953 - CA265_RS17700 0.26 -0.3 4,414,953 - CA265_RS17700 0.26 -0.8 4,414,993 - CA265_RS17700 0.27 +0.1 4,415,098 + CA265_RS17700 0.31 +1.9 4,415,098 + CA265_RS17700 0.31 -0.3 4,415,098 + CA265_RS17700 0.31 +0.0 4,415,102 + CA265_RS17700 0.31 +0.3 4,415,122 - CA265_RS17700 0.32 -0.9 4,415,182 - CA265_RS17700 0.34 -0.5 4,415,182 - CA265_RS17700 0.34 -0.2 4,415,182 - CA265_RS17700 0.34 -0.3 4,415,205 + CA265_RS17700 0.35 -0.5 4,415,270 - CA265_RS17700 0.37 +0.0 4,415,270 - CA265_RS17700 0.37 +0.1 4,415,297 + CA265_RS17700 0.38 -0.1 4,415,310 + CA265_RS17700 0.38 +0.3 4,415,311 - CA265_RS17700 0.38 -0.5 4,415,311 - CA265_RS17700 0.38 -0.0 4,415,318 - CA265_RS17700 0.39 -0.5 4,415,354 + CA265_RS17700 0.40 +0.4 4,415,383 + CA265_RS17700 0.41 +0.6 4,415,383 + CA265_RS17700 0.41 -0.1 4,415,383 + CA265_RS17700 0.41 +0.0 4,415,384 - CA265_RS17700 0.41 +0.2 4,415,393 + CA265_RS17700 0.41 -0.6 4,415,393 + CA265_RS17700 0.41 +1.3 4,415,401 + CA265_RS17700 0.42 +1.2 4,415,504 + CA265_RS17700 0.45 +0.7 4,415,509 + CA265_RS17700 0.46 +0.5 4,415,535 + CA265_RS17700 0.46 -0.1 4,415,541 + CA265_RS17700 0.47 -0.5 4,415,541 + CA265_RS17700 0.47 -1.0 4,415,542 - CA265_RS17700 0.47 +0.6 4,415,542 - CA265_RS17700 0.47 +0.8 4,415,542 - CA265_RS17700 0.47 +0.4 4,415,585 - CA265_RS17700 0.48 -0.7 4,415,675 + CA265_RS17700 0.51 +0.3 4,415,688 + CA265_RS17700 0.52 +0.3 4,415,689 - CA265_RS17700 0.52 -0.7 4,415,713 + CA265_RS17700 0.53 +0.9 4,415,717 + CA265_RS17700 0.53 -0.3 4,415,736 + CA265_RS17700 0.54 +1.2 4,415,802 + CA265_RS17700 0.56 -0.3 4,415,803 - CA265_RS17700 0.56 -0.8 4,415,810 + CA265_RS17700 0.56 +0.2 4,415,850 + CA265_RS17700 0.58 -0.3 4,415,878 + CA265_RS17700 0.59 +1.1 4,415,936 + CA265_RS17700 0.61 -0.3 4,415,936 + CA265_RS17700 0.61 +0.2 4,416,012 + CA265_RS17700 0.63 +0.0 4,416,064 + CA265_RS17700 0.65 +0.7 4,416,064 + CA265_RS17700 0.65 -0.0 4,416,064 + CA265_RS17700 0.65 +0.7 4,416,121 - CA265_RS17700 0.67 +0.7 4,416,125 + CA265_RS17700 0.68 +0.6 4,416,143 + CA265_RS17700 0.68 +0.5 4,416,144 - CA265_RS17700 0.68 +0.6 4,416,144 - CA265_RS17700 0.68 -0.5 4,416,144 - CA265_RS17700 0.68 +0.7 4,416,238 + CA265_RS17700 0.72 +0.5 4,416,238 + CA265_RS17700 0.72 -1.0 4,416,239 - CA265_RS17700 0.72 +0.2 4,416,239 - CA265_RS17700 0.72 +0.9 4,416,310 + CA265_RS17700 0.74 -1.0 4,416,311 - CA265_RS17700 0.74 -1.8 4,416,328 - CA265_RS17700 0.75 +0.0 4,416,346 + CA265_RS17700 0.75 -1.8 4,416,384 - CA265_RS17700 0.77 -0.3 4,416,400 - CA265_RS17700 0.77 -0.4 4,416,406 + CA265_RS17700 0.78 +0.7 4,416,431 - CA265_RS17700 0.78 +0.7 4,416,473 + CA265_RS17700 0.80 -0.0 4,416,479 + CA265_RS17700 0.80 -0.7 4,416,530 + CA265_RS17700 0.82 +0.6 4,416,557 + CA265_RS17700 0.83 +0.5 4,416,597 + CA265_RS17700 0.84 +0.3 4,416,598 - CA265_RS17700 0.84 -0.5 4,416,617 + CA265_RS17700 0.85 +0.2 4,416,628 + CA265_RS17700 0.85 -1.5 4,416,694 + CA265_RS17700 0.88 -0.1 4,416,740 + CA265_RS17700 0.89 +0.3 4,416,741 - CA265_RS17700 0.90 -0.8 4,416,743 + CA265_RS17700 0.90 +0.1 4,416,744 - CA265_RS17700 0.90 -0.9 4,416,744 - CA265_RS17700 0.90 +0.5 4,416,785 - -0.6 4,416,862 + -0.5 4,416,893 + -0.2 4,416,965 + -0.6 4,416,982 - +0.6 4,417,022 - +0.3 4,417,025 - +0.3 4,417,326 + +0.2 4,417,442 + -0.4 4,417,496 + +0.2 4,417,496 + +0.9 4,417,497 - -0.6 4,417,517 + +0.4 4,417,653 - -0.1 4,417,696 - -0.4 4,417,708 + CA265_RS17705 0.10 +0.5 4,417,709 - CA265_RS17705 0.10 +0.5 4,417,709 - CA265_RS17705 0.10 -0.5 4,417,832 + CA265_RS17705 0.17 +0.6 4,417,844 - +0.3 4,417,887 + CA265_RS17705 0.19 +0.2 4,417,914 - CA265_RS17705 0.21 +0.2 4,417,914 - CA265_RS17705 0.21 -2.5 4,417,949 + CA265_RS17705 0.22 +0.3 4,417,949 + CA265_RS17705 0.22 -0.5 4,417,967 + CA265_RS17705 0.23 -0.0 4,417,967 + CA265_RS17705 0.23 -0.1 4,417,988 + CA265_RS17705 0.24 +1.1 4,417,988 + CA265_RS17705 0.24 +0.4 4,418,024 + CA265_RS17705 0.26 -1.1 4,418,025 - CA265_RS17705 0.26 +0.7
Or see this region's nucleotide sequence