Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS16980 and CA265_RS16985 are separated by 139 nucleotides CA265_RS16985 and CA265_RS16990 are separated by 10 nucleotides CA265_RS16990 and CA265_RS16995 are separated by 271 nucleotides CA265_RS16995 and CA265_RS17000 are separated by 147 nucleotides CA265_RS17000 and CA265_RS17005 are separated by 52 nucleotides CA265_RS17005 and CA265_RS17010 are separated by 136 nucleotides
CA265_RS16980: CA265_RS16980 - deoxyguanosinetriphosphate triphosphohydrolase, at 4,238,536 to 4,239,882
_RS16980
CA265_RS16985: CA265_RS16985 - hypothetical protein, at 4,240,022 to 4,240,384
_RS16985
CA265_RS16990: CA265_RS16990 - hypothetical protein, at 4,240,395 to 4,240,589
_RS16990
CA265_RS16995: CA265_RS16995 - hypothetical protein, at 4,240,861 to 4,241,145
_RS16995
CA265_RS17000: CA265_RS17000 - hypothetical protein, at 4,241,293 to 4,241,586
_RS17000
CA265_RS17005: CA265_RS17005 - 30S ribosomal protein S10, at 4,241,639 to 4,241,944
_RS17005
CA265_RS17010: CA265_RS17010 - elongation factor G, at 4,242,081 to 4,244,195
_RS17010
Position (kb) 4240
4241
4242 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4239.989 kb on - strand at 4240.008 kb on - strand at 4240.011 kb on + strand at 4240.012 kb on - strand at 4240.035 kb on + strand at 4240.036 kb on - strand at 4240.036 kb on - strand at 4240.038 kb on - strand at 4240.055 kb on - strand at 4240.068 kb on + strand, within CA265_RS16985 at 4240.127 kb on - strand, within CA265_RS16985 at 4240.177 kb on + strand, within CA265_RS16985 at 4240.210 kb on + strand, within CA265_RS16985 at 4240.268 kb on - strand, within CA265_RS16985 at 4240.381 kb on - strand at 4240.381 kb on - strand at 4240.450 kb on - strand, within CA265_RS16990 at 4240.450 kb on - strand, within CA265_RS16990 at 4240.450 kb on - strand, within CA265_RS16990 at 4240.454 kb on + strand, within CA265_RS16990 at 4240.533 kb on - strand, within CA265_RS16990 at 4240.552 kb on + strand, within CA265_RS16990 at 4240.594 kb on + strand at 4240.628 kb on - strand at 4240.628 kb on - strand at 4240.629 kb on + strand at 4240.630 kb on - strand at 4240.630 kb on - strand at 4240.635 kb on + strand at 4240.636 kb on - strand at 4240.641 kb on - strand at 4240.669 kb on - strand at 4240.733 kb on + strand at 4240.734 kb on - strand at 4240.759 kb on - strand at 4240.811 kb on + strand at 4240.851 kb on + strand at 4240.853 kb on + strand at 4240.857 kb on + strand at 4240.946 kb on - strand, within CA265_RS16995 at 4240.990 kb on + strand, within CA265_RS16995 at 4241.038 kb on - strand, within CA265_RS16995 at 4241.045 kb on + strand, within CA265_RS16995 at 4241.045 kb on + strand, within CA265_RS16995 at 4241.074 kb on - strand, within CA265_RS16995 at 4241.156 kb on + strand at 4241.159 kb on + strand at 4241.159 kb on + strand at 4241.162 kb on - strand at 4241.201 kb on + strand at 4241.201 kb on + strand at 4241.223 kb on + strand at 4241.246 kb on + strand at 4241.246 kb on + strand at 4241.246 kb on + strand at 4241.246 kb on + strand at 4241.247 kb on - strand at 4241.278 kb on - strand at 4241.294 kb on + strand at 4241.346 kb on + strand, within CA265_RS17000 at 4241.587 kb on - strand at 4242.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,239,989 - +0.0 4,240,008 - -0.3 4,240,011 + -0.3 4,240,012 - -1.0 4,240,035 + -0.3 4,240,036 - +0.4 4,240,036 - +0.1 4,240,038 - +0.7 4,240,055 - +0.2 4,240,068 + CA265_RS16985 0.13 -0.2 4,240,127 - CA265_RS16985 0.29 -0.8 4,240,177 + CA265_RS16985 0.43 -0.4 4,240,210 + CA265_RS16985 0.52 +0.5 4,240,268 - CA265_RS16985 0.68 +1.5 4,240,381 - -0.4 4,240,381 - -0.3 4,240,450 - CA265_RS16990 0.28 -2.3 4,240,450 - CA265_RS16990 0.28 +0.1 4,240,450 - CA265_RS16990 0.28 +0.4 4,240,454 + CA265_RS16990 0.30 -1.2 4,240,533 - CA265_RS16990 0.71 -0.4 4,240,552 + CA265_RS16990 0.81 +2.1 4,240,594 + -0.4 4,240,628 - -0.5 4,240,628 - +1.1 4,240,629 + -1.7 4,240,630 - -0.2 4,240,630 - +0.4 4,240,635 + -0.3 4,240,636 - -0.9 4,240,641 - +0.9 4,240,669 - -0.8 4,240,733 + +1.2 4,240,734 - -1.0 4,240,759 - -0.5 4,240,811 + -0.4 4,240,851 + -0.1 4,240,853 + +0.9 4,240,857 + -0.1 4,240,946 - CA265_RS16995 0.30 +0.1 4,240,990 + CA265_RS16995 0.45 +0.6 4,241,038 - CA265_RS16995 0.62 -0.0 4,241,045 + CA265_RS16995 0.65 +1.4 4,241,045 + CA265_RS16995 0.65 +0.3 4,241,074 - CA265_RS16995 0.75 +0.9 4,241,156 + -0.6 4,241,159 + +0.6 4,241,159 + -0.4 4,241,162 - -0.0 4,241,201 + +0.4 4,241,201 + +0.2 4,241,223 + -0.2 4,241,246 + +1.0 4,241,246 + -0.6 4,241,246 + +0.4 4,241,246 + +0.5 4,241,247 - +0.5 4,241,278 - +0.3 4,241,294 + +0.6 4,241,346 + CA265_RS17000 0.18 +0.8 4,241,587 - -1.6 4,242,083 - -0.4
Or see this region's nucleotide sequence