Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07755

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS07750 and CA265_RS07755 are separated by 228 nucleotidesCA265_RS07755 and CA265_RS07760 overlap by 17 nucleotidesCA265_RS07760 and CA265_RS07765 overlap by 10 nucleotides CA265_RS07750: CA265_RS07750 - aminoacetone oxidase family FAD-binding enzyme, at 1,936,228 to 1,937,418 _RS07750 CA265_RS07755: CA265_RS07755 - hypothetical protein, at 1,937,647 to 1,937,889 _RS07755 CA265_RS07760: CA265_RS07760 - hypothetical protein, at 1,937,873 to 1,938,199 _RS07760 CA265_RS07765: CA265_RS07765 - hypothetical protein, at 1,938,190 to 1,938,906 _RS07765 Position (kb) 1937 1938Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1936.650 kb on + strand, within CA265_RS07750at 1936.688 kb on + strand, within CA265_RS07750at 1936.689 kb on - strand, within CA265_RS07750at 1936.711 kb on - strand, within CA265_RS07750at 1936.785 kb on - strand, within CA265_RS07750at 1936.812 kb on - strand, within CA265_RS07750at 1936.821 kb on - strand, within CA265_RS07750at 1936.927 kb on - strand, within CA265_RS07750at 1937.029 kb on - strand, within CA265_RS07750at 1937.070 kb on - strand, within CA265_RS07750at 1937.121 kb on - strand, within CA265_RS07750at 1937.121 kb on - strand, within CA265_RS07750at 1937.138 kb on + strand, within CA265_RS07750at 1937.160 kb on - strand, within CA265_RS07750at 1937.181 kb on - strand, within CA265_RS07750at 1937.250 kb on - strandat 1937.279 kb on + strand, within CA265_RS07750at 1937.340 kb on - strandat 1937.347 kb on - strandat 1937.416 kb on + strandat 1937.423 kb on + strandat 1937.424 kb on - strandat 1937.428 kb on - strandat 1937.475 kb on - strandat 1937.556 kb on + strandat 1937.658 kb on - strandat 1937.861 kb on + strand, within CA265_RS07755at 1937.862 kb on - strand, within CA265_RS07755at 1937.865 kb on + strandat 1937.903 kb on - strandat 1937.995 kb on - strand, within CA265_RS07760at 1938.069 kb on - strand, within CA265_RS07760at 1938.079 kb on + strand, within CA265_RS07760at 1938.079 kb on + strand, within CA265_RS07760at 1938.079 kb on + strand, within CA265_RS07760at 1938.080 kb on - strand, within CA265_RS07760at 1938.080 kb on - strand, within CA265_RS07760at 1938.106 kb on + strand, within CA265_RS07760at 1938.111 kb on - strand, within CA265_RS07760at 1938.114 kb on + strand, within CA265_RS07760at 1938.115 kb on - strand, within CA265_RS07760at 1938.144 kb on + strand, within CA265_RS07760at 1938.184 kb on - strandat 1938.187 kb on + strandat 1938.188 kb on - strandat 1938.188 kb on - strandat 1938.197 kb on + strandat 1938.319 kb on + strand, within CA265_RS07765at 1938.320 kb on - strand, within CA265_RS07765at 1938.332 kb on - strand, within CA265_RS07765at 1938.393 kb on - strand, within CA265_RS07765at 1938.426 kb on + strandat 1938.427 kb on - strand, within CA265_RS07765at 1938.427 kb on - strand, within CA265_RS07765at 1938.446 kb on + strand, within CA265_RS07765at 1938.447 kb on - strand, within CA265_RS07765at 1938.492 kb on - strand, within CA265_RS07765at 1938.586 kb on + strand, within CA265_RS07765at 1938.586 kb on + strand, within CA265_RS07765at 1938.591 kb on + strand, within CA265_RS07765at 1938.609 kb on + strand, within CA265_RS07765at 1938.609 kb on + strand, within CA265_RS07765at 1938.655 kb on + strand, within CA265_RS07765at 1938.796 kb on - strand, within CA265_RS07765

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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1,936,650 + CA265_RS07750 0.35 -1.4
1,936,688 + CA265_RS07750 0.39 +0.6
1,936,689 - CA265_RS07750 0.39 +0.3
1,936,711 - CA265_RS07750 0.41 +0.2
1,936,785 - CA265_RS07750 0.47 +0.0
1,936,812 - CA265_RS07750 0.49 +0.1
1,936,821 - CA265_RS07750 0.50 -0.5
1,936,927 - CA265_RS07750 0.59 -0.4
1,937,029 - CA265_RS07750 0.67 -0.1
1,937,070 - CA265_RS07750 0.71 -0.2
1,937,121 - CA265_RS07750 0.75 +0.9
1,937,121 - CA265_RS07750 0.75 -0.1
1,937,138 + CA265_RS07750 0.76 -0.9
1,937,160 - CA265_RS07750 0.78 -0.4
1,937,181 - CA265_RS07750 0.80 -0.8
1,937,250 - +1.6
1,937,279 + CA265_RS07750 0.88 -0.9
1,937,340 - -0.6
1,937,347 - -0.4
1,937,416 + -0.3
1,937,423 + -0.2
1,937,424 - +0.4
1,937,428 - +0.2
1,937,475 - +0.2
1,937,556 + -0.2
1,937,658 - -0.4
1,937,861 + CA265_RS07755 0.88 +0.9
1,937,862 - CA265_RS07755 0.88 -0.0
1,937,865 + +0.0
1,937,903 - +0.4
1,937,995 - CA265_RS07760 0.37 +0.2
1,938,069 - CA265_RS07760 0.60 +0.4
1,938,079 + CA265_RS07760 0.63 -0.7
1,938,079 + CA265_RS07760 0.63 +0.2
1,938,079 + CA265_RS07760 0.63 -0.4
1,938,080 - CA265_RS07760 0.63 -0.4
1,938,080 - CA265_RS07760 0.63 -0.1
1,938,106 + CA265_RS07760 0.71 -0.4
1,938,111 - CA265_RS07760 0.73 +0.1
1,938,114 + CA265_RS07760 0.74 +0.2
1,938,115 - CA265_RS07760 0.74 +0.2
1,938,144 + CA265_RS07760 0.83 -1.8
1,938,184 - -0.3
1,938,187 + -0.2
1,938,188 - +0.1
1,938,188 - -3.4
1,938,197 + -0.2
1,938,319 + CA265_RS07765 0.18 -0.0
1,938,320 - CA265_RS07765 0.18 +0.9
1,938,332 - CA265_RS07765 0.20 +0.1
1,938,393 - CA265_RS07765 0.28 -0.4
1,938,426 + +2.2
1,938,427 - CA265_RS07765 0.33 -0.2
1,938,427 - CA265_RS07765 0.33 -0.5
1,938,446 + CA265_RS07765 0.36 +0.4
1,938,447 - CA265_RS07765 0.36 -0.2
1,938,492 - CA265_RS07765 0.42 -0.3
1,938,586 + CA265_RS07765 0.55 -0.2
1,938,586 + CA265_RS07765 0.55 +1.0
1,938,591 + CA265_RS07765 0.56 +0.2
1,938,609 + CA265_RS07765 0.58 -0.5
1,938,609 + CA265_RS07765 0.58 -0.3
1,938,655 + CA265_RS07765 0.65 -0.7
1,938,796 - CA265_RS07765 0.85 +0.5

Or see this region's nucleotide sequence