Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03805 and CA265_RS03810 are separated by 6 nucleotides CA265_RS03810 and CA265_RS03815 are separated by 233 nucleotides CA265_RS03815 and CA265_RS03820 are separated by 129 nucleotides
CA265_RS03805: CA265_RS03805 - hypothetical protein, at 899,329 to 899,586
_RS03805
CA265_RS03810: CA265_RS03810 - hypothetical protein, at 899,593 to 900,336
_RS03810
CA265_RS03815: CA265_RS03815 - AraC family transcriptional regulator, at 900,570 to 901,418
_RS03815
CA265_RS03820: CA265_RS03820 - deaminase, at 901,548 to 902,876
_RS03820
Position (kb) 900
901
902 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 899.609 kb on + strand at 899.610 kb on - strand at 899.638 kb on + strand at 899.668 kb on - strand, within CA265_RS03810 at 899.730 kb on - strand, within CA265_RS03810 at 899.796 kb on + strand, within CA265_RS03810 at 899.880 kb on + strand, within CA265_RS03810 at 899.881 kb on - strand, within CA265_RS03810 at 899.893 kb on - strand, within CA265_RS03810 at 899.893 kb on - strand, within CA265_RS03810 at 899.950 kb on - strand, within CA265_RS03810 at 900.013 kb on - strand, within CA265_RS03810 at 900.037 kb on - strand, within CA265_RS03810 at 900.125 kb on - strand, within CA265_RS03810 at 900.147 kb on - strand, within CA265_RS03810 at 900.225 kb on + strand, within CA265_RS03810 at 900.281 kb on - strand at 900.354 kb on - strand at 900.399 kb on - strand at 900.400 kb on + strand at 900.403 kb on + strand at 900.406 kb on - strand at 900.455 kb on + strand at 900.475 kb on - strand at 900.498 kb on + strand at 900.546 kb on - strand at 900.574 kb on - strand at 900.710 kb on + strand, within CA265_RS03815 at 900.740 kb on + strand, within CA265_RS03815 at 900.741 kb on - strand, within CA265_RS03815 at 900.788 kb on - strand, within CA265_RS03815 at 900.809 kb on + strand, within CA265_RS03815 at 900.809 kb on + strand, within CA265_RS03815 at 900.810 kb on - strand, within CA265_RS03815 at 900.849 kb on - strand, within CA265_RS03815 at 900.855 kb on - strand, within CA265_RS03815 at 900.907 kb on + strand, within CA265_RS03815 at 900.907 kb on + strand, within CA265_RS03815 at 900.908 kb on - strand, within CA265_RS03815 at 900.934 kb on + strand, within CA265_RS03815 at 900.934 kb on + strand, within CA265_RS03815 at 900.935 kb on - strand, within CA265_RS03815 at 901.025 kb on + strand, within CA265_RS03815 at 901.040 kb on + strand, within CA265_RS03815 at 901.040 kb on + strand, within CA265_RS03815 at 901.118 kb on + strand, within CA265_RS03815 at 901.146 kb on + strand, within CA265_RS03815 at 901.190 kb on + strand, within CA265_RS03815 at 901.385 kb on + strand at 901.469 kb on - strand at 901.489 kb on + strand at 901.552 kb on + strand at 901.553 kb on - strand at 901.553 kb on - strand at 901.621 kb on + strand at 901.621 kb on + strand at 901.622 kb on - strand at 901.723 kb on - strand, within CA265_RS03820 at 901.869 kb on - strand, within CA265_RS03820 at 901.869 kb on - strand, within CA265_RS03820 at 901.886 kb on + strand, within CA265_RS03820 at 901.896 kb on + strand, within CA265_RS03820 at 901.896 kb on + strand, within CA265_RS03820 at 901.995 kb on - strand, within CA265_RS03820 at 902.035 kb on - strand, within CA265_RS03820 at 902.062 kb on + strand, within CA265_RS03820 at 902.075 kb on + strand, within CA265_RS03820 at 902.176 kb on - strand, within CA265_RS03820 at 902.180 kb on + strand, within CA265_RS03820 at 902.294 kb on - strand, within CA265_RS03820 at 902.294 kb on - strand, within CA265_RS03820 at 902.327 kb on + strand, within CA265_RS03820 at 902.327 kb on + strand, within CA265_RS03820 at 902.327 kb on + strand, within CA265_RS03820 at 902.360 kb on - strand, within CA265_RS03820 at 902.385 kb on - strand, within CA265_RS03820
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 899,609 + +0.5 899,610 - -0.5 899,638 + +0.2 899,668 - CA265_RS03810 0.10 +0.1 899,730 - CA265_RS03810 0.18 -2.3 899,796 + CA265_RS03810 0.27 +0.0 899,880 + CA265_RS03810 0.39 -0.1 899,881 - CA265_RS03810 0.39 -0.2 899,893 - CA265_RS03810 0.40 -1.0 899,893 - CA265_RS03810 0.40 +1.1 899,950 - CA265_RS03810 0.48 +0.5 900,013 - CA265_RS03810 0.56 -2.6 900,037 - CA265_RS03810 0.60 -1.4 900,125 - CA265_RS03810 0.72 +0.2 900,147 - CA265_RS03810 0.74 -0.5 900,225 + CA265_RS03810 0.85 +0.3 900,281 - -0.1 900,354 - +0.1 900,399 - +0.1 900,400 + +0.3 900,403 + -0.6 900,406 - +0.1 900,455 + -1.6 900,475 - -0.7 900,498 + +0.6 900,546 - -0.8 900,574 - -0.7 900,710 + CA265_RS03815 0.16 +1.2 900,740 + CA265_RS03815 0.20 +0.2 900,741 - CA265_RS03815 0.20 +1.5 900,788 - CA265_RS03815 0.26 +0.2 900,809 + CA265_RS03815 0.28 -0.4 900,809 + CA265_RS03815 0.28 +0.1 900,810 - CA265_RS03815 0.28 -0.6 900,849 - CA265_RS03815 0.33 +0.0 900,855 - CA265_RS03815 0.34 +0.9 900,907 + CA265_RS03815 0.40 +0.3 900,907 + CA265_RS03815 0.40 +0.7 900,908 - CA265_RS03815 0.40 -2.9 900,934 + CA265_RS03815 0.43 -0.5 900,934 + CA265_RS03815 0.43 -0.1 900,935 - CA265_RS03815 0.43 -0.5 901,025 + CA265_RS03815 0.54 +0.6 901,040 + CA265_RS03815 0.55 +1.1 901,040 + CA265_RS03815 0.55 +0.3 901,118 + CA265_RS03815 0.65 +1.5 901,146 + CA265_RS03815 0.68 +0.2 901,190 + CA265_RS03815 0.73 -0.3 901,385 + -0.7 901,469 - -1.1 901,489 + +0.7 901,552 + -0.3 901,553 - +1.1 901,553 - -0.1 901,621 + +0.1 901,621 + -0.1 901,622 - +0.3 901,723 - CA265_RS03820 0.13 +0.2 901,869 - CA265_RS03820 0.24 -0.3 901,869 - CA265_RS03820 0.24 +0.2 901,886 + CA265_RS03820 0.25 +2.3 901,896 + CA265_RS03820 0.26 +0.4 901,896 + CA265_RS03820 0.26 -0.1 901,995 - CA265_RS03820 0.34 +0.3 902,035 - CA265_RS03820 0.37 -0.7 902,062 + CA265_RS03820 0.39 +0.7 902,075 + CA265_RS03820 0.40 -0.0 902,176 - CA265_RS03820 0.47 -0.6 902,180 + CA265_RS03820 0.48 +0.1 902,294 - CA265_RS03820 0.56 +0.6 902,294 - CA265_RS03820 0.56 -0.2 902,327 + CA265_RS03820 0.59 -0.4 902,327 + CA265_RS03820 0.59 -0.3 902,327 + CA265_RS03820 0.59 +0.0 902,360 - CA265_RS03820 0.61 -1.2 902,385 - CA265_RS03820 0.63 +0.9
Or see this region's nucleotide sequence