Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03380 and CA265_RS03385 are separated by 1 nucleotides CA265_RS03385 and CA265_RS03390 are separated by 53 nucleotides
CA265_RS03380: CA265_RS03380 - hypothetical protein, at 820,498 to 821,634
_RS03380
CA265_RS03385: CA265_RS03385 - hypothetical protein, at 821,636 to 822,016
_RS03385
CA265_RS03390: CA265_RS03390 - dihydroorotase, at 822,070 to 823,404
_RS03390
Position (kb) 821
822
823 Strain fitness (log2 ratio) -1
0
1 at 820.668 kb on + strand, within CA265_RS03380 at 820.668 kb on + strand, within CA265_RS03380 at 820.669 kb on - strand, within CA265_RS03380 at 820.737 kb on + strand, within CA265_RS03380 at 820.816 kb on - strand, within CA265_RS03380 at 820.820 kb on + strand, within CA265_RS03380 at 820.824 kb on - strand, within CA265_RS03380 at 820.872 kb on - strand, within CA265_RS03380 at 820.876 kb on + strand, within CA265_RS03380 at 820.877 kb on - strand, within CA265_RS03380 at 820.880 kb on - strand, within CA265_RS03380 at 820.945 kb on + strand, within CA265_RS03380 at 820.951 kb on - strand, within CA265_RS03380 at 820.960 kb on + strand, within CA265_RS03380 at 820.960 kb on + strand, within CA265_RS03380 at 820.968 kb on + strand, within CA265_RS03380 at 820.972 kb on - strand, within CA265_RS03380 at 821.000 kb on + strand, within CA265_RS03380 at 821.003 kb on + strand, within CA265_RS03380 at 821.064 kb on + strand, within CA265_RS03380 at 821.064 kb on + strand, within CA265_RS03380 at 821.070 kb on - strand, within CA265_RS03380 at 821.073 kb on + strand, within CA265_RS03380 at 821.073 kb on + strand, within CA265_RS03380 at 821.074 kb on - strand, within CA265_RS03380 at 821.083 kb on - strand, within CA265_RS03380 at 821.098 kb on + strand, within CA265_RS03380 at 821.110 kb on + strand, within CA265_RS03380 at 821.167 kb on - strand, within CA265_RS03380 at 821.170 kb on - strand, within CA265_RS03380 at 821.170 kb on - strand, within CA265_RS03380 at 821.174 kb on - strand, within CA265_RS03380 at 821.185 kb on + strand, within CA265_RS03380 at 821.185 kb on + strand, within CA265_RS03380 at 821.193 kb on + strand, within CA265_RS03380 at 821.260 kb on - strand, within CA265_RS03380 at 821.275 kb on + strand, within CA265_RS03380 at 821.338 kb on - strand, within CA265_RS03380 at 821.422 kb on + strand, within CA265_RS03380 at 821.423 kb on - strand, within CA265_RS03380 at 821.423 kb on - strand, within CA265_RS03380 at 821.444 kb on + strand, within CA265_RS03380 at 821.449 kb on + strand, within CA265_RS03380 at 821.450 kb on - strand, within CA265_RS03380 at 821.483 kb on - strand, within CA265_RS03380 at 821.500 kb on - strand, within CA265_RS03380 at 821.622 kb on + strand at 821.644 kb on - strand at 821.663 kb on + strand at 821.826 kb on - strand, within CA265_RS03385 at 821.835 kb on - strand, within CA265_RS03385 at 821.839 kb on + strand, within CA265_RS03385 at 821.903 kb on + strand, within CA265_RS03385 at 822.016 kb on + strand at 822.072 kb on - strand at 822.072 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 820,668 + CA265_RS03380 0.15 -0.4 820,668 + CA265_RS03380 0.15 -0.4 820,669 - CA265_RS03380 0.15 -0.2 820,737 + CA265_RS03380 0.21 +0.3 820,816 - CA265_RS03380 0.28 +0.3 820,820 + CA265_RS03380 0.28 +0.2 820,824 - CA265_RS03380 0.29 -0.7 820,872 - CA265_RS03380 0.33 -0.2 820,876 + CA265_RS03380 0.33 -0.1 820,877 - CA265_RS03380 0.33 +0.1 820,880 - CA265_RS03380 0.34 -0.2 820,945 + CA265_RS03380 0.39 -1.1 820,951 - CA265_RS03380 0.40 +0.4 820,960 + CA265_RS03380 0.41 +0.3 820,960 + CA265_RS03380 0.41 -0.2 820,968 + CA265_RS03380 0.41 -0.9 820,972 - CA265_RS03380 0.42 +0.2 821,000 + CA265_RS03380 0.44 +0.4 821,003 + CA265_RS03380 0.44 -0.3 821,064 + CA265_RS03380 0.50 -0.4 821,064 + CA265_RS03380 0.50 +0.2 821,070 - CA265_RS03380 0.50 -0.1 821,073 + CA265_RS03380 0.51 +0.4 821,073 + CA265_RS03380 0.51 +0.3 821,074 - CA265_RS03380 0.51 +0.1 821,083 - CA265_RS03380 0.51 -0.2 821,098 + CA265_RS03380 0.53 -0.1 821,110 + CA265_RS03380 0.54 -0.3 821,167 - CA265_RS03380 0.59 -0.1 821,170 - CA265_RS03380 0.59 +0.1 821,170 - CA265_RS03380 0.59 -0.5 821,174 - CA265_RS03380 0.59 -0.1 821,185 + CA265_RS03380 0.60 -0.1 821,185 + CA265_RS03380 0.60 -0.3 821,193 + CA265_RS03380 0.61 -0.1 821,260 - CA265_RS03380 0.67 -0.4 821,275 + CA265_RS03380 0.68 +0.1 821,338 - CA265_RS03380 0.74 +0.1 821,422 + CA265_RS03380 0.81 -0.3 821,423 - CA265_RS03380 0.81 +0.0 821,423 - CA265_RS03380 0.81 +0.0 821,444 + CA265_RS03380 0.83 +0.2 821,449 + CA265_RS03380 0.84 -1.3 821,450 - CA265_RS03380 0.84 -0.7 821,483 - CA265_RS03380 0.87 -0.9 821,500 - CA265_RS03380 0.88 -1.5 821,622 + -0.8 821,644 - -0.8 821,663 + -0.9 821,826 - CA265_RS03385 0.50 +0.1 821,835 - CA265_RS03385 0.52 +0.0 821,839 + CA265_RS03385 0.53 +0.9 821,903 + CA265_RS03385 0.70 +0.7 822,016 + +0.5 822,072 - -0.2 822,072 - +1.4
Or see this region's nucleotide sequence