Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03230 and CA265_RS03235 are separated by 251 nucleotides CA265_RS03235 and CA265_RS03240 are separated by 12 nucleotides CA265_RS03240 and CA265_RS03245 overlap by 22 nucleotides
CA265_RS03230: CA265_RS03230 - hypothetical protein, at 794,056 to 795,507
_RS03230
CA265_RS03235: CA265_RS03235 - hypothetical protein, at 795,759 to 796,400
_RS03235
CA265_RS03240: CA265_RS03240 - hypothetical protein, at 796,413 to 797,060
_RS03240
CA265_RS03245: CA265_RS03245 - two-component sensor histidine kinase, at 797,039 to 797,824
_RS03245
Position (kb) 795
796
797 Strain fitness (log2 ratio) -2
-1
0
1
2 at 794.781 kb on - strand, within CA265_RS03230 at 794.784 kb on + strand, within CA265_RS03230 at 794.784 kb on + strand, within CA265_RS03230 at 794.784 kb on + strand, within CA265_RS03230 at 794.808 kb on - strand, within CA265_RS03230 at 794.854 kb on + strand, within CA265_RS03230 at 794.856 kb on + strand, within CA265_RS03230 at 794.971 kb on + strand, within CA265_RS03230 at 794.982 kb on + strand, within CA265_RS03230 at 795.009 kb on - strand, within CA265_RS03230 at 795.014 kb on - strand, within CA265_RS03230 at 795.047 kb on - strand, within CA265_RS03230 at 795.073 kb on + strand, within CA265_RS03230 at 795.095 kb on + strand, within CA265_RS03230 at 795.095 kb on + strand, within CA265_RS03230 at 795.096 kb on - strand, within CA265_RS03230 at 795.101 kb on + strand, within CA265_RS03230 at 795.102 kb on - strand, within CA265_RS03230 at 795.127 kb on + strand, within CA265_RS03230 at 795.180 kb on + strand, within CA265_RS03230 at 795.206 kb on + strand, within CA265_RS03230 at 795.206 kb on + strand, within CA265_RS03230 at 795.206 kb on + strand, within CA265_RS03230 at 795.297 kb on + strand, within CA265_RS03230 at 795.301 kb on + strand, within CA265_RS03230 at 795.318 kb on + strand, within CA265_RS03230 at 795.318 kb on + strand, within CA265_RS03230 at 795.319 kb on - strand, within CA265_RS03230 at 795.330 kb on + strand at 795.414 kb on + strand at 795.449 kb on - strand at 795.459 kb on - strand at 795.471 kb on - strand at 795.476 kb on - strand at 795.514 kb on - strand at 795.514 kb on - strand at 795.537 kb on + strand at 795.594 kb on + strand at 795.783 kb on + strand at 795.783 kb on + strand at 795.784 kb on - strand at 795.811 kb on + strand at 795.816 kb on + strand at 795.819 kb on + strand at 795.927 kb on - strand, within CA265_RS03235 at 795.944 kb on + strand, within CA265_RS03235 at 795.948 kb on - strand, within CA265_RS03235 at 796.086 kb on + strand, within CA265_RS03235 at 796.167 kb on - strand, within CA265_RS03235 at 796.167 kb on - strand, within CA265_RS03235 at 796.167 kb on - strand, within CA265_RS03235 at 796.203 kb on - strand, within CA265_RS03235 at 796.262 kb on - strand, within CA265_RS03235 at 796.412 kb on + strand at 796.412 kb on + strand at 796.413 kb on - strand at 796.413 kb on - strand at 796.493 kb on - strand, within CA265_RS03240 at 796.609 kb on - strand, within CA265_RS03240 at 796.612 kb on - strand, within CA265_RS03240 at 796.613 kb on + strand, within CA265_RS03240 at 796.613 kb on + strand, within CA265_RS03240 at 796.614 kb on - strand, within CA265_RS03240 at 796.614 kb on - strand, within CA265_RS03240 at 796.614 kb on - strand, within CA265_RS03240 at 796.659 kb on + strand, within CA265_RS03240 at 796.677 kb on - strand, within CA265_RS03240 at 796.713 kb on + strand, within CA265_RS03240 at 796.718 kb on - strand, within CA265_RS03240 at 796.727 kb on + strand, within CA265_RS03240 at 796.780 kb on - strand, within CA265_RS03240 at 796.825 kb on - strand, within CA265_RS03240 at 796.857 kb on - strand, within CA265_RS03240 at 796.881 kb on + strand, within CA265_RS03240 at 796.882 kb on - strand, within CA265_RS03240 at 796.956 kb on + strand, within CA265_RS03240 at 796.957 kb on - strand, within CA265_RS03240 at 796.958 kb on + strand, within CA265_RS03240 at 796.959 kb on - strand, within CA265_RS03240 at 796.959 kb on - strand, within CA265_RS03240 at 796.978 kb on - strand, within CA265_RS03240 at 797.008 kb on + strand at 797.009 kb on - strand at 797.016 kb on - strand at 797.017 kb on + strand at 797.020 kb on + strand at 797.037 kb on - strand at 797.058 kb on + strand at 797.118 kb on - strand, within CA265_RS03245 at 797.212 kb on - strand, within CA265_RS03245 at 797.357 kb on + strand, within CA265_RS03245
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 794,781 - CA265_RS03230 0.50 +0.1 794,784 + CA265_RS03230 0.50 -1.0 794,784 + CA265_RS03230 0.50 +0.7 794,784 + CA265_RS03230 0.50 +0.0 794,808 - CA265_RS03230 0.52 +0.7 794,854 + CA265_RS03230 0.55 +0.3 794,856 + CA265_RS03230 0.55 -0.1 794,971 + CA265_RS03230 0.63 -0.1 794,982 + CA265_RS03230 0.64 -2.3 795,009 - CA265_RS03230 0.66 -0.3 795,014 - CA265_RS03230 0.66 -0.5 795,047 - CA265_RS03230 0.68 +1.1 795,073 + CA265_RS03230 0.70 +0.5 795,095 + CA265_RS03230 0.72 -0.4 795,095 + CA265_RS03230 0.72 +1.2 795,096 - CA265_RS03230 0.72 +0.3 795,101 + CA265_RS03230 0.72 +0.4 795,102 - CA265_RS03230 0.72 -0.1 795,127 + CA265_RS03230 0.74 +0.5 795,180 + CA265_RS03230 0.77 +0.5 795,206 + CA265_RS03230 0.79 -0.2 795,206 + CA265_RS03230 0.79 +0.1 795,206 + CA265_RS03230 0.79 -0.7 795,297 + CA265_RS03230 0.85 +0.6 795,301 + CA265_RS03230 0.86 -0.2 795,318 + CA265_RS03230 0.87 -0.4 795,318 + CA265_RS03230 0.87 -2.1 795,319 - CA265_RS03230 0.87 -0.2 795,330 + +2.1 795,414 + -0.3 795,449 - +0.4 795,459 - -0.4 795,471 - +0.1 795,476 - -0.1 795,514 - +0.1 795,514 - +2.0 795,537 + -0.2 795,594 + +1.3 795,783 + +0.6 795,783 + +0.2 795,784 - -0.6 795,811 + +0.2 795,816 + +0.4 795,819 + -1.3 795,927 - CA265_RS03235 0.26 -0.4 795,944 + CA265_RS03235 0.29 +0.0 795,948 - CA265_RS03235 0.29 +0.5 796,086 + CA265_RS03235 0.51 +0.8 796,167 - CA265_RS03235 0.64 +0.5 796,167 - CA265_RS03235 0.64 +0.5 796,167 - CA265_RS03235 0.64 +0.3 796,203 - CA265_RS03235 0.69 -0.2 796,262 - CA265_RS03235 0.78 +0.7 796,412 + +0.5 796,412 + +0.4 796,413 - +1.1 796,413 - +0.9 796,493 - CA265_RS03240 0.12 +0.2 796,609 - CA265_RS03240 0.30 -0.2 796,612 - CA265_RS03240 0.31 -0.3 796,613 + CA265_RS03240 0.31 +0.2 796,613 + CA265_RS03240 0.31 +0.8 796,614 - CA265_RS03240 0.31 +0.8 796,614 - CA265_RS03240 0.31 -0.5 796,614 - CA265_RS03240 0.31 +0.3 796,659 + CA265_RS03240 0.38 -0.1 796,677 - CA265_RS03240 0.41 +1.0 796,713 + CA265_RS03240 0.46 -0.4 796,718 - CA265_RS03240 0.47 +0.6 796,727 + CA265_RS03240 0.48 +0.4 796,780 - CA265_RS03240 0.57 +0.3 796,825 - CA265_RS03240 0.64 +1.1 796,857 - CA265_RS03240 0.69 -0.7 796,881 + CA265_RS03240 0.72 -0.9 796,882 - CA265_RS03240 0.72 -0.2 796,956 + CA265_RS03240 0.84 -0.5 796,957 - CA265_RS03240 0.84 -1.0 796,958 + CA265_RS03240 0.84 +0.1 796,959 - CA265_RS03240 0.84 -0.2 796,959 - CA265_RS03240 0.84 +0.0 796,978 - CA265_RS03240 0.87 -0.0 797,008 + +0.2 797,009 - +0.4 797,016 - +0.2 797,017 + -0.5 797,020 + +0.4 797,037 - -0.4 797,058 + +0.4 797,118 - CA265_RS03245 0.10 +0.0 797,212 - CA265_RS03245 0.22 +0.4 797,357 + CA265_RS03245 0.40 -0.5
Or see this region's nucleotide sequence