Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03225

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03220 and CA265_RS03225 are separated by 944 nucleotidesCA265_RS03225 and CA265_RS03230 overlap by 4 nucleotides CA265_RS03220: CA265_RS03220 - glycine--tRNA ligase, at 791,268 to 792,911 _RS03220 CA265_RS03225: CA265_RS03225 - hypothetical protein, at 793,856 to 794,059 _RS03225 CA265_RS03230: CA265_RS03230 - hypothetical protein, at 794,056 to 795,507 _RS03230 Position (kb) 793 794 795Strain fitness (log2 ratio) -2 -1 0 1 2at 792.929 kb on - strandat 792.951 kb on + strandat 792.958 kb on + strandat 793.044 kb on + strandat 793.182 kb on - strandat 793.182 kb on - strandat 793.284 kb on + strandat 793.284 kb on + strandat 793.285 kb on - strandat 793.286 kb on + strandat 793.286 kb on + strandat 793.287 kb on - strandat 793.316 kb on + strandat 793.317 kb on - strandat 793.317 kb on - strandat 793.341 kb on - strandat 793.379 kb on - strandat 793.453 kb on + strandat 793.453 kb on + strandat 793.473 kb on + strandat 793.498 kb on - strandat 793.498 kb on - strandat 793.541 kb on - strandat 793.550 kb on + strandat 793.683 kb on + strandat 793.683 kb on + strandat 793.734 kb on + strandat 793.735 kb on - strandat 793.736 kb on + strandat 793.737 kb on - strandat 793.737 kb on - strandat 793.745 kb on + strandat 793.748 kb on + strandat 793.776 kb on - strandat 793.807 kb on - strandat 793.889 kb on + strand, within CA265_RS03225at 793.889 kb on + strand, within CA265_RS03225at 793.912 kb on + strand, within CA265_RS03225at 793.943 kb on + strand, within CA265_RS03225at 793.944 kb on - strand, within CA265_RS03225at 793.949 kb on + strand, within CA265_RS03225at 793.950 kb on - strand, within CA265_RS03225at 793.973 kb on + strand, within CA265_RS03225at 793.973 kb on + strand, within CA265_RS03225at 794.059 kb on - strandat 794.113 kb on + strandat 794.158 kb on - strandat 794.252 kb on - strand, within CA265_RS03230at 794.331 kb on + strand, within CA265_RS03230at 794.350 kb on - strand, within CA265_RS03230at 794.356 kb on - strand, within CA265_RS03230at 794.407 kb on + strand, within CA265_RS03230at 794.435 kb on - strand, within CA265_RS03230at 794.435 kb on - strand, within CA265_RS03230at 794.487 kb on + strand, within CA265_RS03230at 794.515 kb on + strand, within CA265_RS03230at 794.543 kb on - strand, within CA265_RS03230at 794.551 kb on + strand, within CA265_RS03230at 794.551 kb on + strand, within CA265_RS03230at 794.552 kb on - strand, within CA265_RS03230at 794.598 kb on - strand, within CA265_RS03230at 794.662 kb on + strand, within CA265_RS03230at 794.686 kb on + strand, within CA265_RS03230at 794.687 kb on - strand, within CA265_RS03230at 794.687 kb on - strand, within CA265_RS03230at 794.687 kb on - strand, within CA265_RS03230at 794.721 kb on + strand, within CA265_RS03230at 794.722 kb on - strand, within CA265_RS03230at 794.781 kb on - strand, within CA265_RS03230at 794.784 kb on + strand, within CA265_RS03230at 794.784 kb on + strand, within CA265_RS03230at 794.784 kb on + strand, within CA265_RS03230at 794.808 kb on - strand, within CA265_RS03230at 794.854 kb on + strand, within CA265_RS03230at 794.856 kb on + strand, within CA265_RS03230at 794.971 kb on + strand, within CA265_RS03230at 794.982 kb on + strand, within CA265_RS03230at 795.009 kb on - strand, within CA265_RS03230at 795.014 kb on - strand, within CA265_RS03230at 795.047 kb on - strand, within CA265_RS03230

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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792,929 - -1.1
792,951 + +0.1
792,958 + -0.2
793,044 + -0.9
793,182 - +0.9
793,182 - +0.1
793,284 + +0.7
793,284 + +0.0
793,285 - +1.8
793,286 + +0.6
793,286 + +0.2
793,287 - +0.4
793,316 + -0.0
793,317 - -2.4
793,317 - -1.1
793,341 - -0.3
793,379 - -0.5
793,453 + -0.2
793,453 + -1.3
793,473 + -0.1
793,498 - +0.2
793,498 - +0.4
793,541 - -0.8
793,550 + +0.2
793,683 + -0.1
793,683 + +0.5
793,734 + +1.0
793,735 - -0.2
793,736 + -0.7
793,737 - -1.3
793,737 - -0.5
793,745 + +1.0
793,748 + -0.1
793,776 - +0.1
793,807 - -0.2
793,889 + CA265_RS03225 0.16 +0.5
793,889 + CA265_RS03225 0.16 +1.8
793,912 + CA265_RS03225 0.27 -0.9
793,943 + CA265_RS03225 0.43 -0.0
793,944 - CA265_RS03225 0.43 +0.1
793,949 + CA265_RS03225 0.46 -0.4
793,950 - CA265_RS03225 0.46 +0.3
793,973 + CA265_RS03225 0.57 +0.4
793,973 + CA265_RS03225 0.57 +0.4
794,059 - +0.3
794,113 + -0.2
794,158 - -0.4
794,252 - CA265_RS03230 0.13 +0.5
794,331 + CA265_RS03230 0.19 -0.3
794,350 - CA265_RS03230 0.20 -0.6
794,356 - CA265_RS03230 0.21 -0.8
794,407 + CA265_RS03230 0.24 +0.2
794,435 - CA265_RS03230 0.26 +0.0
794,435 - CA265_RS03230 0.26 +0.6
794,487 + CA265_RS03230 0.30 +0.1
794,515 + CA265_RS03230 0.32 +0.8
794,543 - CA265_RS03230 0.34 -0.9
794,551 + CA265_RS03230 0.34 +0.2
794,551 + CA265_RS03230 0.34 -0.2
794,552 - CA265_RS03230 0.34 -0.0
794,598 - CA265_RS03230 0.37 -1.4
794,662 + CA265_RS03230 0.42 +0.5
794,686 + CA265_RS03230 0.43 +0.3
794,687 - CA265_RS03230 0.43 -0.3
794,687 - CA265_RS03230 0.43 -0.8
794,687 - CA265_RS03230 0.43 +0.5
794,721 + CA265_RS03230 0.46 +0.3
794,722 - CA265_RS03230 0.46 -0.3
794,781 - CA265_RS03230 0.50 +0.1
794,784 + CA265_RS03230 0.50 -1.0
794,784 + CA265_RS03230 0.50 +0.7
794,784 + CA265_RS03230 0.50 +0.0
794,808 - CA265_RS03230 0.52 +0.7
794,854 + CA265_RS03230 0.55 +0.3
794,856 + CA265_RS03230 0.55 -0.1
794,971 + CA265_RS03230 0.63 -0.1
794,982 + CA265_RS03230 0.64 -2.3
795,009 - CA265_RS03230 0.66 -0.3
795,014 - CA265_RS03230 0.66 -0.5
795,047 - CA265_RS03230 0.68 +1.1

Or see this region's nucleotide sequence