Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03150 and CA265_RS03155 are separated by 25 nucleotides CA265_RS03155 and CA265_RS03160 are separated by 1 nucleotides CA265_RS03160 and CA265_RS03165 are separated by 115 nucleotides
CA265_RS03150: CA265_RS03150 - flavin reductase, at 779,269 to 780,156
_RS03150
CA265_RS03155: CA265_RS03155 - hypothetical protein, at 780,182 to 780,787
_RS03155
CA265_RS03160: CA265_RS03160 - hydrolase, at 780,789 to 781,433
_RS03160
CA265_RS03165: CA265_RS03165 - hypothetical protein, at 781,549 to 781,923
_RS03165
Position (kb) 780
781 Strain fitness (log2 ratio) -2
-1
0
1 at 779.187 kb on - strand at 779.238 kb on + strand at 779.239 kb on - strand at 779.261 kb on - strand at 779.326 kb on + strand at 779.390 kb on + strand, within CA265_RS03150 at 779.391 kb on - strand, within CA265_RS03150 at 779.418 kb on + strand, within CA265_RS03150 at 779.419 kb on - strand, within CA265_RS03150 at 779.472 kb on + strand, within CA265_RS03150 at 779.613 kb on + strand, within CA265_RS03150 at 779.680 kb on - strand, within CA265_RS03150 at 779.680 kb on - strand, within CA265_RS03150 at 779.685 kb on - strand, within CA265_RS03150 at 779.769 kb on + strand, within CA265_RS03150 at 779.839 kb on + strand, within CA265_RS03150 at 779.844 kb on + strand, within CA265_RS03150 at 779.845 kb on - strand, within CA265_RS03150 at 779.877 kb on + strand, within CA265_RS03150 at 779.890 kb on - strand, within CA265_RS03150 at 779.894 kb on + strand, within CA265_RS03150 at 779.894 kb on + strand, within CA265_RS03150 at 779.900 kb on + strand, within CA265_RS03150 at 779.900 kb on + strand, within CA265_RS03150 at 779.901 kb on - strand, within CA265_RS03150 at 779.901 kb on - strand, within CA265_RS03150 at 779.901 kb on - strand, within CA265_RS03150 at 779.943 kb on - strand, within CA265_RS03150 at 780.170 kb on - strand at 780.170 kb on - strand at 780.181 kb on + strand at 780.188 kb on - strand at 780.209 kb on + strand at 780.210 kb on - strand at 780.271 kb on + strand, within CA265_RS03155 at 780.272 kb on - strand, within CA265_RS03155 at 780.272 kb on - strand, within CA265_RS03155 at 780.410 kb on + strand, within CA265_RS03155 at 780.459 kb on + strand, within CA265_RS03155 at 780.504 kb on - strand, within CA265_RS03155 at 780.504 kb on - strand, within CA265_RS03155 at 780.507 kb on + strand, within CA265_RS03155 at 780.508 kb on - strand, within CA265_RS03155 at 780.508 kb on - strand, within CA265_RS03155 at 780.525 kb on + strand, within CA265_RS03155 at 780.541 kb on - strand, within CA265_RS03155 at 780.678 kb on + strand, within CA265_RS03155 at 780.678 kb on + strand, within CA265_RS03155 at 780.679 kb on - strand, within CA265_RS03155 at 780.710 kb on - strand, within CA265_RS03155 at 780.792 kb on + strand at 780.793 kb on - strand at 780.794 kb on + strand at 780.794 kb on + strand at 780.797 kb on + strand at 780.797 kb on + strand at 780.826 kb on + strand at 780.826 kb on + strand at 780.827 kb on - strand at 780.909 kb on - strand, within CA265_RS03160 at 780.933 kb on + strand, within CA265_RS03160 at 780.933 kb on + strand, within CA265_RS03160 at 781.018 kb on + strand, within CA265_RS03160 at 781.072 kb on + strand, within CA265_RS03160 at 781.072 kb on + strand, within CA265_RS03160 at 781.140 kb on + strand, within CA265_RS03160 at 781.141 kb on - strand, within CA265_RS03160 at 781.145 kb on + strand, within CA265_RS03160 at 781.215 kb on - strand, within CA265_RS03160 at 781.417 kb on - strand at 781.526 kb on - strand at 781.646 kb on - strand, within CA265_RS03165 at 781.677 kb on + strand, within CA265_RS03165 at 781.678 kb on - strand, within CA265_RS03165 at 781.679 kb on + strand, within CA265_RS03165 at 781.680 kb on - strand, within CA265_RS03165 at 781.680 kb on - strand, within CA265_RS03165 at 781.691 kb on - strand, within CA265_RS03165 at 781.693 kb on - strand, within CA265_RS03165
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 779,187 - -0.7 779,238 + -1.0 779,239 - -0.4 779,261 - +0.1 779,326 + -1.3 779,390 + CA265_RS03150 0.14 -1.2 779,391 - CA265_RS03150 0.14 +0.4 779,418 + CA265_RS03150 0.17 -1.0 779,419 - CA265_RS03150 0.17 -0.0 779,472 + CA265_RS03150 0.23 -0.7 779,613 + CA265_RS03150 0.39 -0.4 779,680 - CA265_RS03150 0.46 +0.1 779,680 - CA265_RS03150 0.46 -0.9 779,685 - CA265_RS03150 0.47 -0.4 779,769 + CA265_RS03150 0.56 +0.8 779,839 + CA265_RS03150 0.64 -1.8 779,844 + CA265_RS03150 0.65 -0.9 779,845 - CA265_RS03150 0.65 +0.4 779,877 + CA265_RS03150 0.68 -0.5 779,890 - CA265_RS03150 0.70 +0.2 779,894 + CA265_RS03150 0.70 +0.2 779,894 + CA265_RS03150 0.70 -0.6 779,900 + CA265_RS03150 0.71 -0.4 779,900 + CA265_RS03150 0.71 -1.7 779,901 - CA265_RS03150 0.71 -0.2 779,901 - CA265_RS03150 0.71 +1.1 779,901 - CA265_RS03150 0.71 -0.1 779,943 - CA265_RS03150 0.76 +0.2 780,170 - -0.6 780,170 - -0.1 780,181 + +0.6 780,188 - -0.3 780,209 + -0.2 780,210 - -0.6 780,271 + CA265_RS03155 0.15 +0.1 780,272 - CA265_RS03155 0.15 -0.2 780,272 - CA265_RS03155 0.15 +1.5 780,410 + CA265_RS03155 0.38 +1.3 780,459 + CA265_RS03155 0.46 -0.2 780,504 - CA265_RS03155 0.53 +1.2 780,504 - CA265_RS03155 0.53 +0.5 780,507 + CA265_RS03155 0.54 +0.2 780,508 - CA265_RS03155 0.54 +0.8 780,508 - CA265_RS03155 0.54 +0.1 780,525 + CA265_RS03155 0.57 -0.4 780,541 - CA265_RS03155 0.59 +0.2 780,678 + CA265_RS03155 0.82 +0.6 780,678 + CA265_RS03155 0.82 +0.3 780,679 - CA265_RS03155 0.82 -0.3 780,710 - CA265_RS03155 0.87 -0.2 780,792 + -0.1 780,793 - +0.1 780,794 + -1.0 780,794 + +0.6 780,797 + +0.2 780,797 + +0.3 780,826 + +0.1 780,826 + -1.2 780,827 - -0.3 780,909 - CA265_RS03160 0.19 -0.1 780,933 + CA265_RS03160 0.22 -0.6 780,933 + CA265_RS03160 0.22 -0.2 781,018 + CA265_RS03160 0.36 -0.1 781,072 + CA265_RS03160 0.44 +0.0 781,072 + CA265_RS03160 0.44 -0.6 781,140 + CA265_RS03160 0.54 +0.2 781,141 - CA265_RS03160 0.55 -0.5 781,145 + CA265_RS03160 0.55 +0.9 781,215 - CA265_RS03160 0.66 -0.3 781,417 - -0.1 781,526 - +1.1 781,646 - CA265_RS03165 0.26 -0.6 781,677 + CA265_RS03165 0.34 -0.0 781,678 - CA265_RS03165 0.34 -1.0 781,679 + CA265_RS03165 0.35 +0.1 781,680 - CA265_RS03165 0.35 -2.3 781,680 - CA265_RS03165 0.35 -0.2 781,691 - CA265_RS03165 0.38 -0.8 781,693 - CA265_RS03165 0.38 +0.3
Or see this region's nucleotide sequence