Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01975

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01965 and CA265_RS01970 overlap by 4 nucleotidesCA265_RS01970 and CA265_RS01975 overlap by 11 nucleotidesCA265_RS01975 and CA265_RS01980 are separated by 74 nucleotides CA265_RS01965: CA265_RS01965 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase, at 497,847 to 498,752 _RS01965 CA265_RS01970: CA265_RS01970 - hypothetical protein, at 498,749 to 499,171 _RS01970 CA265_RS01975: CA265_RS01975 - cell division protein, at 499,161 to 501,257 _RS01975 CA265_RS01980: CA265_RS01980 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 501,332 to 502,789 _RS01980 Position (kb) 499 500 501 502Strain fitness (log2 ratio) -1 0 1at 500.901 kb on + strand, within CA265_RS01975at 500.985 kb on + strand, within CA265_RS01975at 501.043 kb on + strand, within CA265_RS01975at 501.047 kb on + strand, within CA265_RS01975at 501.135 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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500,901 + CA265_RS01975 0.83 -0.6
500,985 + CA265_RS01975 0.87 +0.6
501,043 + CA265_RS01975 0.90 +1.0
501,047 + CA265_RS01975 0.90 -0.2
501,135 + -0.5

Or see this region's nucleotide sequence