Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01760 and CA265_RS01765 are separated by 4 nucleotides CA265_RS01765 and CA265_RS01770 overlap by 20 nucleotides CA265_RS01770 and CA265_RS01775 overlap by 4 nucleotides
CA265_RS01760: CA265_RS01760 - aminotransferase DegT, at 442,989 to 444,110
_RS01760
CA265_RS01765: CA265_RS01765 - hypothetical protein, at 444,115 to 444,870
_RS01765
CA265_RS01770: CA265_RS01770 - hypothetical protein, at 444,851 to 445,300
_RS01770
CA265_RS01775: CA265_RS01775 - hypothetical protein, at 445,297 to 446,322
_RS01775
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1
2 at 443.977 kb on + strand, within CA265_RS01760 at 443.978 kb on - strand, within CA265_RS01760 at 443.978 kb on - strand, within CA265_RS01760 at 444.009 kb on - strand at 444.045 kb on - strand at 444.054 kb on + strand at 444.054 kb on + strand at 444.057 kb on - strand at 444.241 kb on - strand, within CA265_RS01765 at 444.270 kb on + strand, within CA265_RS01765 at 444.312 kb on + strand, within CA265_RS01765 at 444.313 kb on - strand, within CA265_RS01765 at 444.318 kb on - strand, within CA265_RS01765 at 444.322 kb on - strand, within CA265_RS01765 at 444.459 kb on + strand, within CA265_RS01765 at 444.463 kb on + strand, within CA265_RS01765 at 444.525 kb on + strand, within CA265_RS01765 at 444.525 kb on + strand, within CA265_RS01765 at 444.591 kb on + strand, within CA265_RS01765 at 444.591 kb on + strand, within CA265_RS01765 at 444.591 kb on + strand, within CA265_RS01765 at 444.686 kb on + strand, within CA265_RS01765 at 444.775 kb on - strand, within CA265_RS01765 at 444.786 kb on + strand, within CA265_RS01765 at 444.787 kb on - strand, within CA265_RS01765 at 444.787 kb on - strand, within CA265_RS01765 at 444.788 kb on + strand, within CA265_RS01765 at 444.789 kb on - strand, within CA265_RS01765 at 444.789 kb on - strand, within CA265_RS01765 at 445.093 kb on + strand, within CA265_RS01770 at 445.099 kb on - strand, within CA265_RS01770 at 445.104 kb on - strand, within CA265_RS01770 at 445.157 kb on + strand, within CA265_RS01770 at 445.183 kb on + strand, within CA265_RS01770 at 445.184 kb on - strand, within CA265_RS01770 at 445.184 kb on - strand, within CA265_RS01770 at 445.190 kb on + strand, within CA265_RS01770 at 445.191 kb on - strand, within CA265_RS01770 at 445.282 kb on - strand at 445.306 kb on + strand at 445.306 kb on + strand at 445.382 kb on + strand at 445.383 kb on - strand at 445.433 kb on - strand, within CA265_RS01775 at 445.486 kb on - strand, within CA265_RS01775 at 445.487 kb on + strand, within CA265_RS01775 at 445.487 kb on + strand, within CA265_RS01775 at 445.562 kb on - strand, within CA265_RS01775 at 445.651 kb on - strand, within CA265_RS01775 at 445.683 kb on - strand, within CA265_RS01775 at 445.693 kb on - strand, within CA265_RS01775 at 445.714 kb on + strand, within CA265_RS01775 at 445.761 kb on + strand, within CA265_RS01775 at 445.797 kb on + strand, within CA265_RS01775 at 445.801 kb on + strand, within CA265_RS01775 at 445.801 kb on + strand, within CA265_RS01775 at 445.801 kb on + strand, within CA265_RS01775 at 445.854 kb on + strand, within CA265_RS01775 at 445.854 kb on + strand, within CA265_RS01775 at 445.855 kb on - strand, within CA265_RS01775 at 445.886 kb on - strand, within CA265_RS01775 at 445.911 kb on + strand, within CA265_RS01775 at 445.929 kb on - strand, within CA265_RS01775 at 445.929 kb on - strand, within CA265_RS01775 at 445.929 kb on - strand, within CA265_RS01775 at 445.929 kb on - strand, within CA265_RS01775 at 446.011 kb on - strand, within CA265_RS01775 at 446.031 kb on - strand, within CA265_RS01775 at 446.034 kb on + strand, within CA265_RS01775 at 446.070 kb on + strand, within CA265_RS01775 at 446.117 kb on - strand, within CA265_RS01775 at 446.138 kb on - strand, within CA265_RS01775 at 446.209 kb on + strand, within CA265_RS01775 at 446.210 kb on - strand, within CA265_RS01775 at 446.238 kb on + strand at 446.260 kb on - strand at 446.287 kb on + strand at 446.292 kb on + strand at 446.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 443,977 + CA265_RS01760 0.88 +0.3 443,978 - CA265_RS01760 0.88 -0.4 443,978 - CA265_RS01760 0.88 -2.2 444,009 - -2.1 444,045 - -0.4 444,054 + -0.4 444,054 + -0.3 444,057 - -1.1 444,241 - CA265_RS01765 0.17 +0.6 444,270 + CA265_RS01765 0.21 +0.2 444,312 + CA265_RS01765 0.26 -1.2 444,313 - CA265_RS01765 0.26 +0.4 444,318 - CA265_RS01765 0.27 +0.1 444,322 - CA265_RS01765 0.27 +0.1 444,459 + CA265_RS01765 0.46 -0.5 444,463 + CA265_RS01765 0.46 +0.2 444,525 + CA265_RS01765 0.54 -0.3 444,525 + CA265_RS01765 0.54 -0.1 444,591 + CA265_RS01765 0.63 -0.2 444,591 + CA265_RS01765 0.63 +0.1 444,591 + CA265_RS01765 0.63 +0.6 444,686 + CA265_RS01765 0.76 +0.1 444,775 - CA265_RS01765 0.87 -0.1 444,786 + CA265_RS01765 0.89 -0.4 444,787 - CA265_RS01765 0.89 +0.5 444,787 - CA265_RS01765 0.89 -1.3 444,788 + CA265_RS01765 0.89 -0.2 444,789 - CA265_RS01765 0.89 +0.6 444,789 - CA265_RS01765 0.89 -0.7 445,093 + CA265_RS01770 0.54 -0.0 445,099 - CA265_RS01770 0.55 +0.3 445,104 - CA265_RS01770 0.56 +0.5 445,157 + CA265_RS01770 0.68 -0.2 445,183 + CA265_RS01770 0.74 -0.2 445,184 - CA265_RS01770 0.74 -0.7 445,184 - CA265_RS01770 0.74 +1.8 445,190 + CA265_RS01770 0.75 -0.0 445,191 - CA265_RS01770 0.76 +0.6 445,282 - -0.3 445,306 + -1.9 445,306 + +0.4 445,382 + +0.2 445,383 - +0.1 445,433 - CA265_RS01775 0.13 +1.9 445,486 - CA265_RS01775 0.18 -0.1 445,487 + CA265_RS01775 0.19 -0.1 445,487 + CA265_RS01775 0.19 +0.4 445,562 - CA265_RS01775 0.26 -0.4 445,651 - CA265_RS01775 0.35 -1.4 445,683 - CA265_RS01775 0.38 -0.7 445,693 - CA265_RS01775 0.39 -0.6 445,714 + CA265_RS01775 0.41 +0.3 445,761 + CA265_RS01775 0.45 -0.3 445,797 + CA265_RS01775 0.49 +0.3 445,801 + CA265_RS01775 0.49 +1.4 445,801 + CA265_RS01775 0.49 -1.7 445,801 + CA265_RS01775 0.49 -0.3 445,854 + CA265_RS01775 0.54 -0.0 445,854 + CA265_RS01775 0.54 +0.6 445,855 - CA265_RS01775 0.54 -0.5 445,886 - CA265_RS01775 0.57 +0.1 445,911 + CA265_RS01775 0.60 -0.5 445,929 - CA265_RS01775 0.62 -0.3 445,929 - CA265_RS01775 0.62 +0.6 445,929 - CA265_RS01775 0.62 -0.8 445,929 - CA265_RS01775 0.62 -0.4 446,011 - CA265_RS01775 0.70 -0.7 446,031 - CA265_RS01775 0.72 -0.3 446,034 + CA265_RS01775 0.72 -0.6 446,070 + CA265_RS01775 0.75 -0.0 446,117 - CA265_RS01775 0.80 -0.4 446,138 - CA265_RS01775 0.82 -0.8 446,209 + CA265_RS01775 0.89 -0.1 446,210 - CA265_RS01775 0.89 -0.5 446,238 + +0.0 446,260 - -0.3 446,287 + -0.2 446,292 + +0.2 446,293 - +0.4
Or see this region's nucleotide sequence