Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01555 and CA265_RS01560 are separated by 0 nucleotides CA265_RS01560 and CA265_RS01565 are separated by 2 nucleotides CA265_RS01565 and CA265_RS01570 are separated by 3 nucleotides
CA265_RS01555: CA265_RS01555 - KaiC 1, at 400,883 to 402,631
_RS01555
CA265_RS01560: CA265_RS01560 - circadian clock protein KaiB, at 402,632 to 402,922
_RS01560
CA265_RS01565: CA265_RS01565 - circadian clock protein KaiB, at 402,925 to 403,239
_RS01565
CA265_RS01570: CA265_RS01570 - hypothetical protein, at 403,243 to 405,012
_RS01570
Position (kb) 402
403 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 401.723 kb on - strand, within CA265_RS01555 at 401.723 kb on - strand, within CA265_RS01555 at 401.725 kb on - strand, within CA265_RS01555 at 401.764 kb on - strand, within CA265_RS01555 at 401.764 kb on - strand, within CA265_RS01555 at 401.889 kb on + strand, within CA265_RS01555 at 401.932 kb on - strand, within CA265_RS01555 at 402.030 kb on + strand, within CA265_RS01555 at 402.039 kb on + strand, within CA265_RS01555 at 402.040 kb on - strand, within CA265_RS01555 at 402.231 kb on - strand, within CA265_RS01555 at 402.231 kb on - strand, within CA265_RS01555 at 402.231 kb on - strand, within CA265_RS01555 at 402.232 kb on + strand, within CA265_RS01555 at 402.233 kb on - strand, within CA265_RS01555 at 402.316 kb on - strand, within CA265_RS01555 at 402.316 kb on - strand, within CA265_RS01555 at 402.318 kb on - strand, within CA265_RS01555 at 402.318 kb on - strand, within CA265_RS01555 at 402.437 kb on - strand, within CA265_RS01555 at 402.508 kb on + strand at 402.520 kb on - strand at 402.520 kb on - strand at 402.590 kb on - strand at 402.662 kb on + strand, within CA265_RS01560 at 402.662 kb on + strand, within CA265_RS01560 at 402.743 kb on + strand, within CA265_RS01560 at 402.745 kb on + strand, within CA265_RS01560 at 402.898 kb on + strand at 402.899 kb on - strand at 402.900 kb on + strand at 402.905 kb on - strand at 402.921 kb on - strand at 402.921 kb on - strand at 402.954 kb on + strand at 403.032 kb on + strand, within CA265_RS01565 at 403.033 kb on - strand, within CA265_RS01565 at 403.073 kb on - strand, within CA265_RS01565 at 403.110 kb on - strand, within CA265_RS01565 at 403.116 kb on - strand, within CA265_RS01565 at 403.263 kb on + strand at 403.263 kb on + strand at 403.264 kb on - strand at 403.282 kb on + strand at 403.282 kb on + strand at 403.365 kb on - strand at 403.365 kb on - strand at 403.413 kb on + strand at 403.413 kb on + strand at 403.484 kb on - strand, within CA265_RS01570 at 403.517 kb on + strand, within CA265_RS01570 at 403.583 kb on + strand, within CA265_RS01570 at 403.584 kb on - strand, within CA265_RS01570 at 403.596 kb on + strand, within CA265_RS01570 at 403.597 kb on - strand, within CA265_RS01570 at 403.597 kb on - strand, within CA265_RS01570 at 403.599 kb on + strand, within CA265_RS01570 at 403.618 kb on - strand, within CA265_RS01570 at 403.618 kb on - strand, within CA265_RS01570 at 403.618 kb on - strand, within CA265_RS01570 at 403.763 kb on + strand, within CA265_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 401,723 - CA265_RS01555 0.48 +0.9 401,723 - CA265_RS01555 0.48 +0.4 401,725 - CA265_RS01555 0.48 -0.1 401,764 - CA265_RS01555 0.50 -1.6 401,764 - CA265_RS01555 0.50 -0.2 401,889 + CA265_RS01555 0.58 +1.1 401,932 - CA265_RS01555 0.60 -0.4 402,030 + CA265_RS01555 0.66 -0.4 402,039 + CA265_RS01555 0.66 -0.8 402,040 - CA265_RS01555 0.66 +0.2 402,231 - CA265_RS01555 0.77 +0.7 402,231 - CA265_RS01555 0.77 -0.1 402,231 - CA265_RS01555 0.77 -0.1 402,232 + CA265_RS01555 0.77 +0.1 402,233 - CA265_RS01555 0.77 -0.0 402,316 - CA265_RS01555 0.82 -0.1 402,316 - CA265_RS01555 0.82 -0.3 402,318 - CA265_RS01555 0.82 -0.1 402,318 - CA265_RS01555 0.82 +0.2 402,437 - CA265_RS01555 0.89 +0.4 402,508 + -2.1 402,520 - -0.4 402,520 - -0.0 402,590 - +1.4 402,662 + CA265_RS01560 0.10 +3.0 402,662 + CA265_RS01560 0.10 +0.2 402,743 + CA265_RS01560 0.38 -0.2 402,745 + CA265_RS01560 0.39 +0.0 402,898 + -0.1 402,899 - +0.2 402,900 + -1.2 402,905 - +0.2 402,921 - -0.6 402,921 - +0.4 402,954 + -0.7 403,032 + CA265_RS01565 0.34 +0.2 403,033 - CA265_RS01565 0.34 +0.2 403,073 - CA265_RS01565 0.47 +0.2 403,110 - CA265_RS01565 0.59 -0.2 403,116 - CA265_RS01565 0.61 -0.3 403,263 + -0.4 403,263 + +0.3 403,264 - +0.3 403,282 + -1.2 403,282 + +0.0 403,365 - -0.2 403,365 - -0.2 403,413 + +0.5 403,413 + -1.2 403,484 - CA265_RS01570 0.14 +0.4 403,517 + CA265_RS01570 0.15 -0.3 403,583 + CA265_RS01570 0.19 +0.2 403,584 - CA265_RS01570 0.19 +0.2 403,596 + CA265_RS01570 0.20 -0.2 403,597 - CA265_RS01570 0.20 +0.3 403,597 - CA265_RS01570 0.20 +0.1 403,599 + CA265_RS01570 0.20 -0.4 403,618 - CA265_RS01570 0.21 +0.0 403,618 - CA265_RS01570 0.21 +0.6 403,618 - CA265_RS01570 0.21 +0.5 403,763 + CA265_RS01570 0.29 +0.0
Or see this region's nucleotide sequence