Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01255

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01245 and CA265_RS01250 are separated by 6 nucleotidesCA265_RS01250 and CA265_RS01255 are separated by 0 nucleotidesCA265_RS01255 and CA265_RS01260 are separated by 152 nucleotidesCA265_RS01260 and CA265_RS01265 are separated by 173 nucleotides CA265_RS01245: CA265_RS01245 - hypothetical protein, at 308,921 to 310,324 _RS01245 CA265_RS01250: CA265_RS01250 - hypothetical protein, at 310,331 to 310,762 _RS01250 CA265_RS01255: CA265_RS01255 - hypothetical protein, at 310,763 to 311,734 _RS01255 CA265_RS01260: CA265_RS01260 - hypothetical protein, at 311,887 to 312,243 _RS01260 CA265_RS01265: CA265_RS01265 - GntR family transcriptional regulator, at 312,417 to 313,157 _RS01265 Position (kb) 310 311 312Strain fitness (log2 ratio) -2 -1 0 1 2at 309.787 kb on + strand, within CA265_RS01245at 310.029 kb on + strand, within CA265_RS01245at 310.143 kb on + strand, within CA265_RS01245at 310.144 kb on - strand, within CA265_RS01245at 310.182 kb on + strand, within CA265_RS01245at 310.209 kb on + strandat 310.209 kb on + strandat 310.303 kb on - strandat 310.303 kb on - strandat 310.311 kb on + strandat 310.322 kb on + strandat 310.323 kb on - strandat 310.356 kb on + strandat 310.357 kb on - strandat 310.357 kb on - strandat 310.357 kb on - strandat 310.357 kb on - strandat 310.362 kb on + strandat 310.363 kb on - strandat 310.425 kb on - strand, within CA265_RS01250at 310.486 kb on - strand, within CA265_RS01250at 310.490 kb on + strand, within CA265_RS01250at 310.491 kb on - strand, within CA265_RS01250at 310.491 kb on - strand, within CA265_RS01250at 310.502 kb on - strand, within CA265_RS01250at 310.515 kb on + strand, within CA265_RS01250at 310.675 kb on - strand, within CA265_RS01250at 310.681 kb on + strand, within CA265_RS01250at 310.682 kb on - strand, within CA265_RS01250at 310.850 kb on - strandat 310.887 kb on + strand, within CA265_RS01255at 310.887 kb on + strand, within CA265_RS01255at 310.887 kb on + strand, within CA265_RS01255at 310.888 kb on - strand, within CA265_RS01255at 310.888 kb on - strand, within CA265_RS01255at 310.888 kb on - strand, within CA265_RS01255at 310.928 kb on + strand, within CA265_RS01255at 310.940 kb on - strand, within CA265_RS01255at 310.949 kb on + strand, within CA265_RS01255at 310.949 kb on + strand, within CA265_RS01255at 310.972 kb on + strand, within CA265_RS01255at 310.972 kb on + strand, within CA265_RS01255at 311.007 kb on - strand, within CA265_RS01255at 311.060 kb on - strand, within CA265_RS01255at 311.137 kb on + strand, within CA265_RS01255at 311.166 kb on - strand, within CA265_RS01255at 311.180 kb on + strand, within CA265_RS01255at 311.321 kb on + strand, within CA265_RS01255at 311.366 kb on + strand, within CA265_RS01255at 311.371 kb on + strand, within CA265_RS01255at 311.400 kb on + strand, within CA265_RS01255at 311.400 kb on + strand, within CA265_RS01255at 311.400 kb on + strand, within CA265_RS01255at 311.404 kb on - strand, within CA265_RS01255at 311.425 kb on - strand, within CA265_RS01255at 311.525 kb on - strand, within CA265_RS01255at 311.621 kb on - strand, within CA265_RS01255at 311.621 kb on - strand, within CA265_RS01255at 311.622 kb on + strand, within CA265_RS01255at 311.623 kb on - strand, within CA265_RS01255at 311.672 kb on + strandat 311.673 kb on - strandat 311.676 kb on + strandat 311.677 kb on - strandat 311.684 kb on - strandat 311.687 kb on - strandat 311.738 kb on - strandat 311.815 kb on - strandat 311.881 kb on - strandat 312.016 kb on + strand, within CA265_RS01260at 312.017 kb on - strand, within CA265_RS01260at 312.049 kb on - strand, within CA265_RS01260at 312.062 kb on + strand, within CA265_RS01260at 312.063 kb on - strand, within CA265_RS01260at 312.085 kb on - strand, within CA265_RS01260at 312.195 kb on - strand, within CA265_RS01260at 312.195 kb on - strand, within CA265_RS01260at 312.197 kb on - strand, within CA265_RS01260at 312.242 kb on - strandat 312.249 kb on + strandat 312.249 kb on + strandat 312.261 kb on + strandat 312.266 kb on - strandat 312.321 kb on - strandat 312.330 kb on - strandat 312.339 kb on - strandat 312.353 kb on - strandat 312.361 kb on + strandat 312.384 kb on - strandat 312.391 kb on + strandat 312.393 kb on + strandat 312.449 kb on + strandat 312.449 kb on + strandat 312.713 kb on + strand, within CA265_RS01265

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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309,787 + CA265_RS01245 0.62 -0.6
310,029 + CA265_RS01245 0.79 -0.1
310,143 + CA265_RS01245 0.87 +0.7
310,144 - CA265_RS01245 0.87 -0.7
310,182 + CA265_RS01245 0.90 +0.0
310,209 + -0.8
310,209 + -0.2
310,303 - +0.5
310,303 - +0.7
310,311 + -0.3
310,322 + -1.2
310,323 - -0.2
310,356 + -0.8
310,357 - -0.6
310,357 - +0.6
310,357 - +0.7
310,357 - -0.1
310,362 + -0.2
310,363 - -0.2
310,425 - CA265_RS01250 0.22 -1.1
310,486 - CA265_RS01250 0.36 -0.7
310,490 + CA265_RS01250 0.37 -1.7
310,491 - CA265_RS01250 0.37 -1.0
310,491 - CA265_RS01250 0.37 -0.1
310,502 - CA265_RS01250 0.40 -1.2
310,515 + CA265_RS01250 0.43 -0.1
310,675 - CA265_RS01250 0.80 +0.5
310,681 + CA265_RS01250 0.81 -0.8
310,682 - CA265_RS01250 0.81 -0.8
310,850 - -0.9
310,887 + CA265_RS01255 0.13 +0.1
310,887 + CA265_RS01255 0.13 -2.2
310,887 + CA265_RS01255 0.13 +0.2
310,888 - CA265_RS01255 0.13 +0.6
310,888 - CA265_RS01255 0.13 -0.1
310,888 - CA265_RS01255 0.13 -0.7
310,928 + CA265_RS01255 0.17 -0.5
310,940 - CA265_RS01255 0.18 -0.0
310,949 + CA265_RS01255 0.19 -0.1
310,949 + CA265_RS01255 0.19 -0.7
310,972 + CA265_RS01255 0.22 +0.1
310,972 + CA265_RS01255 0.22 -0.2
311,007 - CA265_RS01255 0.25 +2.1
311,060 - CA265_RS01255 0.31 -0.0
311,137 + CA265_RS01255 0.38 +0.4
311,166 - CA265_RS01255 0.41 +0.1
311,180 + CA265_RS01255 0.43 +0.7
311,321 + CA265_RS01255 0.57 +0.2
311,366 + CA265_RS01255 0.62 -0.3
311,371 + CA265_RS01255 0.63 +0.4
311,400 + CA265_RS01255 0.66 +1.9
311,400 + CA265_RS01255 0.66 +0.4
311,400 + CA265_RS01255 0.66 +0.3
311,404 - CA265_RS01255 0.66 -0.6
311,425 - CA265_RS01255 0.68 +0.1
311,525 - CA265_RS01255 0.78 -0.9
311,621 - CA265_RS01255 0.88 -1.1
311,621 - CA265_RS01255 0.88 -0.3
311,622 + CA265_RS01255 0.88 -1.4
311,623 - CA265_RS01255 0.88 +0.3
311,672 + -1.5
311,673 - +0.3
311,676 + -2.6
311,677 - -0.7
311,684 - -0.3
311,687 - +0.1
311,738 - -0.4
311,815 - +0.3
311,881 - -0.4
312,016 + CA265_RS01260 0.36 -1.0
312,017 - CA265_RS01260 0.36 -1.1
312,049 - CA265_RS01260 0.45 -0.4
312,062 + CA265_RS01260 0.49 +1.4
312,063 - CA265_RS01260 0.49 +0.4
312,085 - CA265_RS01260 0.55 -0.5
312,195 - CA265_RS01260 0.86 +0.2
312,195 - CA265_RS01260 0.86 -0.7
312,197 - CA265_RS01260 0.87 +0.4
312,242 - +2.4
312,249 + +0.4
312,249 + -0.3
312,261 + +0.7
312,266 - -0.3
312,321 - -0.3
312,330 - -0.5
312,339 - -0.3
312,353 - -0.4
312,361 + -1.3
312,384 - -0.0
312,391 + -0.7
312,393 + -0.8
312,449 + -0.2
312,449 + -1.2
312,713 + CA265_RS01265 0.40 -1.5

Or see this region's nucleotide sequence