Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01225

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01215 and CA265_RS01220 overlap by 8 nucleotidesCA265_RS01220 and CA265_RS01225 are separated by 2 nucleotidesCA265_RS01225 and CA265_RS01230 are separated by 404 nucleotides CA265_RS01215: CA265_RS01215 - sterol desaturase, at 302,503 to 303,465 _RS01215 CA265_RS01220: CA265_RS01220 - hypothetical protein, at 303,458 to 303,658 _RS01220 CA265_RS01225: CA265_RS01225 - hypothetical protein, at 303,661 to 303,921 _RS01225 CA265_RS01230: CA265_RS01230 - hypothetical protein, at 304,326 to 306,656 _RS01230 Position (kb) 303 304Strain fitness (log2 ratio) -2 -1 0 1at 302.665 kb on - strand, within CA265_RS01215at 302.718 kb on - strand, within CA265_RS01215at 302.725 kb on - strand, within CA265_RS01215at 302.801 kb on + strand, within CA265_RS01215at 302.823 kb on + strand, within CA265_RS01215at 302.826 kb on + strand, within CA265_RS01215at 302.906 kb on + strand, within CA265_RS01215at 302.911 kb on - strand, within CA265_RS01215at 302.931 kb on + strand, within CA265_RS01215at 302.934 kb on + strand, within CA265_RS01215at 302.935 kb on - strand, within CA265_RS01215at 302.955 kb on + strand, within CA265_RS01215at 302.961 kb on + strand, within CA265_RS01215at 303.004 kb on + strand, within CA265_RS01215at 303.030 kb on - strand, within CA265_RS01215at 303.053 kb on + strand, within CA265_RS01215at 303.053 kb on + strand, within CA265_RS01215at 303.053 kb on + strand, within CA265_RS01215at 303.054 kb on - strand, within CA265_RS01215at 303.092 kb on + strand, within CA265_RS01215at 303.093 kb on - strand, within CA265_RS01215at 303.154 kb on - strand, within CA265_RS01215at 303.184 kb on + strand, within CA265_RS01215at 303.250 kb on + strand, within CA265_RS01215at 303.250 kb on + strand, within CA265_RS01215at 303.268 kb on + strand, within CA265_RS01215at 303.275 kb on + strand, within CA265_RS01215at 303.327 kb on + strand, within CA265_RS01215at 303.327 kb on + strand, within CA265_RS01215at 303.328 kb on - strand, within CA265_RS01215at 303.366 kb on - strand, within CA265_RS01215at 303.367 kb on + strand, within CA265_RS01215at 303.497 kb on + strand, within CA265_RS01220at 303.595 kb on - strand, within CA265_RS01220at 303.595 kb on - strand, within CA265_RS01220at 303.623 kb on + strand, within CA265_RS01220at 303.640 kb on + strandat 303.681 kb on - strandat 303.711 kb on + strand, within CA265_RS01225at 303.730 kb on - strand, within CA265_RS01225at 303.759 kb on + strand, within CA265_RS01225at 303.759 kb on + strand, within CA265_RS01225at 303.814 kb on - strand, within CA265_RS01225at 303.834 kb on + strand, within CA265_RS01225at 303.891 kb on + strand, within CA265_RS01225at 303.967 kb on - strandat 303.990 kb on - strandat 304.002 kb on + strandat 304.131 kb on + strandat 304.131 kb on + strandat 304.132 kb on - strandat 304.198 kb on - strandat 304.272 kb on + strandat 304.273 kb on - strandat 304.273 kb on - strandat 304.367 kb on - strandat 304.453 kb on + strandat 304.490 kb on - strandat 304.502 kb on + strandat 304.530 kb on - strandat 304.550 kb on - strandat 304.555 kb on + strandat 304.590 kb on - strand, within CA265_RS01230at 304.592 kb on - strand, within CA265_RS01230at 304.739 kb on + strand, within CA265_RS01230at 304.747 kb on - strand, within CA265_RS01230at 304.749 kb on - strand, within CA265_RS01230at 304.749 kb on - strand, within CA265_RS01230at 304.773 kb on + strand, within CA265_RS01230at 304.774 kb on - strand, within CA265_RS01230at 304.776 kb on + strand, within CA265_RS01230at 304.776 kb on + strand, within CA265_RS01230at 304.777 kb on - strand, within CA265_RS01230at 304.919 kb on + strand, within CA265_RS01230at 304.919 kb on + strand, within CA265_RS01230at 304.919 kb on + strand, within CA265_RS01230

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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302,665 - CA265_RS01215 0.17 +0.1
302,718 - CA265_RS01215 0.22 -1.1
302,725 - CA265_RS01215 0.23 -0.9
302,801 + CA265_RS01215 0.31 -0.1
302,823 + CA265_RS01215 0.33 +0.7
302,826 + CA265_RS01215 0.34 +0.2
302,906 + CA265_RS01215 0.42 -0.4
302,911 - CA265_RS01215 0.42 -0.2
302,931 + CA265_RS01215 0.44 +0.6
302,934 + CA265_RS01215 0.45 -0.3
302,935 - CA265_RS01215 0.45 -1.0
302,955 + CA265_RS01215 0.47 -0.3
302,961 + CA265_RS01215 0.48 +0.2
303,004 + CA265_RS01215 0.52 +0.1
303,030 - CA265_RS01215 0.55 -0.2
303,053 + CA265_RS01215 0.57 -2.6
303,053 + CA265_RS01215 0.57 -0.1
303,053 + CA265_RS01215 0.57 +0.4
303,054 - CA265_RS01215 0.57 +0.3
303,092 + CA265_RS01215 0.61 -1.3
303,093 - CA265_RS01215 0.61 +0.4
303,154 - CA265_RS01215 0.68 -0.0
303,184 + CA265_RS01215 0.71 +0.2
303,250 + CA265_RS01215 0.78 +0.5
303,250 + CA265_RS01215 0.78 -0.8
303,268 + CA265_RS01215 0.79 -0.5
303,275 + CA265_RS01215 0.80 +0.1
303,327 + CA265_RS01215 0.86 -0.7
303,327 + CA265_RS01215 0.86 -0.2
303,328 - CA265_RS01215 0.86 +0.8
303,366 - CA265_RS01215 0.90 -0.4
303,367 + CA265_RS01215 0.90 +0.1
303,497 + CA265_RS01220 0.19 +0.7
303,595 - CA265_RS01220 0.68 -0.2
303,595 - CA265_RS01220 0.68 -0.4
303,623 + CA265_RS01220 0.82 -0.5
303,640 + -0.5
303,681 - -0.4
303,711 + CA265_RS01225 0.19 +0.4
303,730 - CA265_RS01225 0.26 +0.8
303,759 + CA265_RS01225 0.38 +0.9
303,759 + CA265_RS01225 0.38 +0.2
303,814 - CA265_RS01225 0.59 -0.2
303,834 + CA265_RS01225 0.66 +0.5
303,891 + CA265_RS01225 0.88 -0.1
303,967 - +0.1
303,990 - -0.2
304,002 + -0.5
304,131 + -0.2
304,131 + -0.2
304,132 - -0.9
304,198 - -0.2
304,272 + +1.3
304,273 - -0.9
304,273 - +0.2
304,367 - +0.7
304,453 + -0.8
304,490 - +0.5
304,502 + -2.0
304,530 - -0.3
304,550 - -1.2
304,555 + -0.6
304,590 - CA265_RS01230 0.11 -0.9
304,592 - CA265_RS01230 0.11 -0.1
304,739 + CA265_RS01230 0.18 -0.3
304,747 - CA265_RS01230 0.18 +0.4
304,749 - CA265_RS01230 0.18 -0.4
304,749 - CA265_RS01230 0.18 -0.8
304,773 + CA265_RS01230 0.19 -0.3
304,774 - CA265_RS01230 0.19 +0.4
304,776 + CA265_RS01230 0.19 -0.3
304,776 + CA265_RS01230 0.19 +0.6
304,777 - CA265_RS01230 0.19 -0.1
304,919 + CA265_RS01230 0.25 -0.8
304,919 + CA265_RS01230 0.25 -1.5
304,919 + CA265_RS01230 0.25 +0.3

Or see this region's nucleotide sequence