Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01050 and CA265_RS01055 are separated by 179 nucleotides CA265_RS01055 and CA265_RS01060 are separated by 273 nucleotides
CA265_RS01050: CA265_RS01050 - sodium:solute symporter, at 267,835 to 269,529
_RS01050
CA265_RS01055: CA265_RS01055 - hypothetical protein, at 269,709 to 270,227
_RS01055
CA265_RS01060: CA265_RS01060 - alpha-mannosidase, at 270,501 to 272,585
_RS01060
Position (kb) 269
270
271 Strain fitness (log2 ratio) -1
0
1 at 268.821 kb on + strand, within CA265_RS01050 at 268.821 kb on + strand, within CA265_RS01050 at 268.821 kb on + strand, within CA265_RS01050 at 268.826 kb on + strand, within CA265_RS01050 at 268.893 kb on - strand, within CA265_RS01050 at 268.914 kb on + strand, within CA265_RS01050 at 268.981 kb on + strand, within CA265_RS01050 at 268.981 kb on + strand, within CA265_RS01050 at 268.984 kb on - strand, within CA265_RS01050 at 269.008 kb on + strand, within CA265_RS01050 at 269.011 kb on - strand, within CA265_RS01050 at 269.034 kb on + strand, within CA265_RS01050 at 269.035 kb on - strand, within CA265_RS01050 at 269.145 kb on - strand, within CA265_RS01050 at 269.145 kb on - strand, within CA265_RS01050 at 269.157 kb on + strand, within CA265_RS01050 at 269.289 kb on - strand, within CA265_RS01050 at 269.370 kb on - strand at 269.414 kb on - strand at 269.469 kb on - strand at 269.473 kb on - strand at 269.503 kb on - strand at 269.535 kb on - strand at 269.581 kb on - strand at 269.597 kb on - strand at 269.638 kb on + strand at 269.656 kb on - strand at 269.700 kb on + strand at 269.701 kb on - strand at 269.708 kb on + strand at 269.723 kb on + strand at 269.753 kb on + strand at 269.844 kb on - strand, within CA265_RS01055 at 269.853 kb on + strand, within CA265_RS01055 at 269.854 kb on - strand, within CA265_RS01055 at 269.909 kb on + strand, within CA265_RS01055 at 270.133 kb on + strand, within CA265_RS01055 at 270.218 kb on + strand at 270.218 kb on + strand at 270.221 kb on + strand at 270.222 kb on - strand at 270.234 kb on - strand at 270.303 kb on - strand at 270.369 kb on + strand at 270.371 kb on + strand at 270.379 kb on + strand at 270.451 kb on + strand at 270.499 kb on + strand at 270.499 kb on + strand at 270.557 kb on - strand at 270.587 kb on + strand at 270.888 kb on + strand, within CA265_RS01060 at 270.888 kb on + strand, within CA265_RS01060 at 270.932 kb on - strand, within CA265_RS01060 at 270.957 kb on + strand, within CA265_RS01060 at 271.043 kb on - strand, within CA265_RS01060 at 271.049 kb on + strand, within CA265_RS01060 at 271.050 kb on - strand, within CA265_RS01060 at 271.102 kb on - strand, within CA265_RS01060 at 271.114 kb on - strand, within CA265_RS01060 at 271.117 kb on - strand, within CA265_RS01060 at 271.171 kb on + strand, within CA265_RS01060
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 268,821 + CA265_RS01050 0.58 +0.5 268,821 + CA265_RS01050 0.58 -0.3 268,821 + CA265_RS01050 0.58 -0.4 268,826 + CA265_RS01050 0.58 -0.6 268,893 - CA265_RS01050 0.62 -0.2 268,914 + CA265_RS01050 0.64 -0.2 268,981 + CA265_RS01050 0.68 -0.7 268,981 + CA265_RS01050 0.68 +0.4 268,984 - CA265_RS01050 0.68 +0.7 269,008 + CA265_RS01050 0.69 -0.4 269,011 - CA265_RS01050 0.69 -0.4 269,034 + CA265_RS01050 0.71 +1.2 269,035 - CA265_RS01050 0.71 +0.1 269,145 - CA265_RS01050 0.77 +0.2 269,145 - CA265_RS01050 0.77 +0.1 269,157 + CA265_RS01050 0.78 +0.4 269,289 - CA265_RS01050 0.86 +0.5 269,370 - +0.2 269,414 - -0.4 269,469 - -0.0 269,473 - -1.3 269,503 - +0.2 269,535 - +0.0 269,581 - -0.2 269,597 - -0.1 269,638 + -0.6 269,656 - -0.0 269,700 + +0.3 269,701 - -0.1 269,708 + +0.3 269,723 + +0.7 269,753 + +0.4 269,844 - CA265_RS01055 0.26 +0.4 269,853 + CA265_RS01055 0.28 -0.1 269,854 - CA265_RS01055 0.28 +0.0 269,909 + CA265_RS01055 0.39 +0.7 270,133 + CA265_RS01055 0.82 +0.3 270,218 + -0.4 270,218 + -0.1 270,221 + +0.5 270,222 - -0.3 270,234 - -0.2 270,303 - +0.2 270,369 + -0.9 270,371 + -0.6 270,379 + +1.7 270,451 + +0.1 270,499 + -1.0 270,499 + -0.5 270,557 - -0.6 270,587 + -0.0 270,888 + CA265_RS01060 0.19 +0.7 270,888 + CA265_RS01060 0.19 +0.1 270,932 - CA265_RS01060 0.21 +1.1 270,957 + CA265_RS01060 0.22 +0.6 271,043 - CA265_RS01060 0.26 +0.5 271,049 + CA265_RS01060 0.26 -0.4 271,050 - CA265_RS01060 0.26 -0.9 271,102 - CA265_RS01060 0.29 +0.9 271,114 - CA265_RS01060 0.29 +0.5 271,117 - CA265_RS01060 0.30 +0.1 271,171 + CA265_RS01060 0.32 -0.0
Or see this region's nucleotide sequence