Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00935 and CA265_RS00940 are separated by 563 nucleotides CA265_RS00940 and CA265_RS00945 overlap by 38 nucleotides
CA265_RS00935: CA265_RS00935 - hypothetical protein, at 233,511 to 234,644
_RS00935
CA265_RS00940: CA265_RS00940 - hypothetical protein, at 235,208 to 235,444
_RS00940
CA265_RS00945: CA265_RS00945 - SusC/RagA family TonB-linked outer membrane protein, at 235,407 to 238,538
_RS00945
Position (kb) 235
236 Strain fitness (log2 ratio) -2
-1
0
1 at 234.261 kb on - strand, within CA265_RS00935 at 234.339 kb on - strand, within CA265_RS00935 at 234.397 kb on + strand, within CA265_RS00935 at 234.398 kb on - strand, within CA265_RS00935 at 234.431 kb on - strand, within CA265_RS00935 at 234.470 kb on + strand, within CA265_RS00935 at 234.559 kb on + strand at 234.559 kb on + strand at 234.560 kb on - strand at 234.560 kb on - strand at 234.642 kb on + strand at 234.660 kb on - strand at 234.660 kb on - strand at 234.660 kb on - strand at 234.815 kb on - strand at 234.888 kb on + strand at 235.045 kb on + strand at 235.124 kb on - strand at 235.134 kb on - strand at 235.135 kb on + strand at 235.135 kb on + strand at 235.135 kb on + strand at 235.237 kb on + strand, within CA265_RS00940 at 235.238 kb on - strand, within CA265_RS00940 at 235.258 kb on + strand, within CA265_RS00940 at 235.302 kb on - strand, within CA265_RS00940 at 235.303 kb on + strand, within CA265_RS00940 at 235.304 kb on - strand, within CA265_RS00940 at 235.391 kb on + strand, within CA265_RS00940 at 235.452 kb on - strand at 235.567 kb on + strand at 235.676 kb on + strand at 235.723 kb on + strand, within CA265_RS00945 at 235.916 kb on + strand, within CA265_RS00945 at 235.947 kb on + strand, within CA265_RS00945 at 235.954 kb on + strand, within CA265_RS00945 at 236.071 kb on + strand, within CA265_RS00945 at 236.073 kb on + strand, within CA265_RS00945 at 236.148 kb on + strand, within CA265_RS00945 at 236.148 kb on + strand, within CA265_RS00945 at 236.148 kb on + strand, within CA265_RS00945 at 236.149 kb on - strand, within CA265_RS00945 at 236.215 kb on - strand, within CA265_RS00945 at 236.295 kb on - strand, within CA265_RS00945 at 236.295 kb on - strand, within CA265_RS00945 at 236.326 kb on + strand, within CA265_RS00945 at 236.326 kb on + strand, within CA265_RS00945 at 236.361 kb on + strand, within CA265_RS00945 at 236.362 kb on - strand, within CA265_RS00945 at 236.362 kb on - strand, within CA265_RS00945 at 236.363 kb on + strand, within CA265_RS00945
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 234,261 - CA265_RS00935 0.66 +1.0 234,339 - CA265_RS00935 0.73 -0.0 234,397 + CA265_RS00935 0.78 -0.6 234,398 - CA265_RS00935 0.78 +0.5 234,431 - CA265_RS00935 0.81 +0.2 234,470 + CA265_RS00935 0.85 -2.6 234,559 + +0.7 234,559 + -0.3 234,560 - +0.5 234,560 - +0.7 234,642 + -0.6 234,660 - -0.0 234,660 - -0.2 234,660 - -0.1 234,815 - -0.1 234,888 + +0.3 235,045 + -0.2 235,124 - +0.5 235,134 - -2.2 235,135 + -0.2 235,135 + -0.4 235,135 + -0.3 235,237 + CA265_RS00940 0.12 +0.5 235,238 - CA265_RS00940 0.13 +0.7 235,258 + CA265_RS00940 0.21 +0.1 235,302 - CA265_RS00940 0.40 +0.0 235,303 + CA265_RS00940 0.40 +0.7 235,304 - CA265_RS00940 0.41 -1.5 235,391 + CA265_RS00940 0.77 -0.1 235,452 - -0.7 235,567 + -1.6 235,676 + +1.1 235,723 + CA265_RS00945 0.10 -0.6 235,916 + CA265_RS00945 0.16 +0.7 235,947 + CA265_RS00945 0.17 +0.1 235,954 + CA265_RS00945 0.17 -0.2 236,071 + CA265_RS00945 0.21 -0.3 236,073 + CA265_RS00945 0.21 +0.2 236,148 + CA265_RS00945 0.24 -1.6 236,148 + CA265_RS00945 0.24 +0.3 236,148 + CA265_RS00945 0.24 -0.0 236,149 - CA265_RS00945 0.24 -0.4 236,215 - CA265_RS00945 0.26 +0.1 236,295 - CA265_RS00945 0.28 +0.2 236,295 - CA265_RS00945 0.28 -1.4 236,326 + CA265_RS00945 0.29 +0.2 236,326 + CA265_RS00945 0.29 -0.8 236,361 + CA265_RS00945 0.30 -0.8 236,362 - CA265_RS00945 0.30 -0.1 236,362 - CA265_RS00945 0.30 +0.2 236,363 + CA265_RS00945 0.31 +0.0
Or see this region's nucleotide sequence