Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4871 and Ac3H11_4872 are separated by 119 nucleotides Ac3H11_4872 and Ac3H11_4873 are separated by 78 nucleotides Ac3H11_4873 and Ac3H11_4874 are separated by 46 nucleotides
Ac3H11_4871 - hypothetical protein, at 31,729 to 33,435
_4871
Ac3H11_4872 - Predicted transcriptional regulator for fatty acid degradation FadP, TetR family, at 33,555 to 34,166
_4872
Ac3H11_4873 - hypothetical protein, at 34,245 to 34,358
_4873
Ac3H11_4874 - VfmD protein, at 34,405 to 35,385
_4874
Position (kb) 34
35 Strain fitness (log2 ratio) -2
-1
0
1 at 33.319 kb on - strand at 33.422 kb on + strand at 33.422 kb on + strand at 33.422 kb on + strand at 33.423 kb on - strand at 33.423 kb on - strand at 33.423 kb on - strand at 33.879 kb on + strand, within Ac3H11_4872 at 33.879 kb on + strand, within Ac3H11_4872 at 33.880 kb on - strand, within Ac3H11_4872 at 33.880 kb on - strand, within Ac3H11_4872 at 33.880 kb on - strand, within Ac3H11_4872 at 33.880 kb on - strand, within Ac3H11_4872 at 33.880 kb on - strand, within Ac3H11_4872 at 34.047 kb on + strand, within Ac3H11_4872 at 34.048 kb on - strand, within Ac3H11_4872 at 34.048 kb on - strand, within Ac3H11_4872 at 34.048 kb on - strand, within Ac3H11_4872 at 34.048 kb on - strand, within Ac3H11_4872 at 34.146 kb on + strand at 34.146 kb on + strand at 34.146 kb on + strand at 34.146 kb on + strand at 34.146 kb on + strand at 34.146 kb on + strand at 34.146 kb on + strand at 34.146 kb on + strand at 34.146 kb on + strand at 34.146 kb on + strand at 34.147 kb on - strand at 34.147 kb on - strand at 34.147 kb on - strand at 34.147 kb on - strand at 34.147 kb on - strand at 34.147 kb on - strand at 34.456 kb on + strand at 34.456 kb on + strand at 34.654 kb on + strand, within Ac3H11_4874 at 34.654 kb on + strand, within Ac3H11_4874 at 34.654 kb on + strand, within Ac3H11_4874 at 34.654 kb on + strand, within Ac3H11_4874 at 34.654 kb on + strand, within Ac3H11_4874 at 34.654 kb on + strand, within Ac3H11_4874 at 34.655 kb on - strand, within Ac3H11_4874 at 34.655 kb on - strand, within Ac3H11_4874 at 34.655 kb on - strand, within Ac3H11_4874 at 34.655 kb on - strand, within Ac3H11_4874 at 34.655 kb on - strand, within Ac3H11_4874 at 34.849 kb on + strand, within Ac3H11_4874 at 34.850 kb on - strand, within Ac3H11_4874 at 34.850 kb on - strand, within Ac3H11_4874 at 34.850 kb on - strand, within Ac3H11_4874 at 34.850 kb on - strand, within Ac3H11_4874 at 34.850 kb on - strand, within Ac3H11_4874 at 34.850 kb on - strand, within Ac3H11_4874 at 34.898 kb on + strand, within Ac3H11_4874 at 34.999 kb on + strand, within Ac3H11_4874 at 34.999 kb on + strand, within Ac3H11_4874
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 33,319 - +0.2 33,422 + -0.8 33,422 + -0.7 33,422 + -0.3 33,423 - +1.3 33,423 - +0.2 33,423 - +0.9 33,879 + Ac3H11_4872 0.53 +0.6 33,879 + Ac3H11_4872 0.53 -0.3 33,880 - Ac3H11_4872 0.53 -1.4 33,880 - Ac3H11_4872 0.53 -0.9 33,880 - Ac3H11_4872 0.53 +1.4 33,880 - Ac3H11_4872 0.53 -1.3 33,880 - Ac3H11_4872 0.53 +0.7 34,047 + Ac3H11_4872 0.80 +0.6 34,048 - Ac3H11_4872 0.81 -0.3 34,048 - Ac3H11_4872 0.81 +1.1 34,048 - Ac3H11_4872 0.81 +0.2 34,048 - Ac3H11_4872 0.81 -0.3 34,146 + -0.8 34,146 + -1.2 34,146 + -0.2 34,146 + +0.4 34,146 + -1.1 34,146 + -1.0 34,146 + -0.1 34,146 + +0.6 34,146 + -1.1 34,146 + +0.5 34,147 - -1.4 34,147 - +0.5 34,147 - -0.0 34,147 - +0.0 34,147 - +1.7 34,147 - -0.9 34,456 + -0.5 34,456 + -0.7 34,654 + Ac3H11_4874 0.25 -0.3 34,654 + Ac3H11_4874 0.25 +1.1 34,654 + Ac3H11_4874 0.25 -0.2 34,654 + Ac3H11_4874 0.25 +0.2 34,654 + Ac3H11_4874 0.25 +1.0 34,654 + Ac3H11_4874 0.25 +0.1 34,655 - Ac3H11_4874 0.25 -2.3 34,655 - Ac3H11_4874 0.25 +0.9 34,655 - Ac3H11_4874 0.25 -0.1 34,655 - Ac3H11_4874 0.25 -0.2 34,655 - Ac3H11_4874 0.25 -0.3 34,849 + Ac3H11_4874 0.45 -0.9 34,850 - Ac3H11_4874 0.45 +0.2 34,850 - Ac3H11_4874 0.45 +1.2 34,850 - Ac3H11_4874 0.45 -0.2 34,850 - Ac3H11_4874 0.45 +0.2 34,850 - Ac3H11_4874 0.45 +0.8 34,850 - Ac3H11_4874 0.45 -0.6 34,898 + Ac3H11_4874 0.50 -1.1 34,999 + Ac3H11_4874 0.61 +0.1 34,999 + Ac3H11_4874 0.61 -0.4
Or see this region's nucleotide sequence