Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_375 and Ac3H11_376 are separated by 301 nucleotides Ac3H11_376 and Ac3H11_564 are separated by 16 nucleotides Ac3H11_564 and Ac3H11_377 are separated by 63 nucleotides
Ac3H11_375 - Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83), at 50,604 to 51,698
_375
Ac3H11_376 - DNA-binding protein HU-beta, at 52,000 to 52,272
_376
Ac3H11_564 - tRNA-Val-TAC, at 52,289 to 52,361
_564
Ac3H11_377 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 52,425 to 54,353
_377
Position (kb) 51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 51.034 kb on - strand, within Ac3H11_375 at 51.057 kb on + strand, within Ac3H11_375 at 51.057 kb on + strand, within Ac3H11_375 at 51.057 kb on + strand, within Ac3H11_375 at 51.057 kb on + strand, within Ac3H11_375 at 51.057 kb on + strand, within Ac3H11_375 at 51.057 kb on + strand, within Ac3H11_375 at 51.057 kb on + strand, within Ac3H11_375 at 51.057 kb on + strand, within Ac3H11_375 at 51.058 kb on - strand, within Ac3H11_375 at 51.058 kb on - strand, within Ac3H11_375 at 51.058 kb on - strand, within Ac3H11_375 at 51.058 kb on - strand, within Ac3H11_375 at 51.058 kb on - strand, within Ac3H11_375 at 51.253 kb on - strand, within Ac3H11_375 at 51.739 kb on + strand at 51.739 kb on + strand at 51.790 kb on + strand at 51.791 kb on - strand at 51.796 kb on + strand at 51.834 kb on + strand at 51.834 kb on + strand at 51.834 kb on + strand at 51.889 kb on - strand at 51.889 kb on - strand at 52.191 kb on + strand, within Ac3H11_376
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 51,034 - Ac3H11_375 0.39 +0.1 51,057 + Ac3H11_375 0.41 +1.0 51,057 + Ac3H11_375 0.41 +0.6 51,057 + Ac3H11_375 0.41 +0.3 51,057 + Ac3H11_375 0.41 +0.8 51,057 + Ac3H11_375 0.41 -1.7 51,057 + Ac3H11_375 0.41 +0.7 51,057 + Ac3H11_375 0.41 +0.1 51,057 + Ac3H11_375 0.41 -0.3 51,058 - Ac3H11_375 0.41 -0.4 51,058 - Ac3H11_375 0.41 +0.1 51,058 - Ac3H11_375 0.41 +1.0 51,058 - Ac3H11_375 0.41 +0.1 51,058 - Ac3H11_375 0.41 -0.2 51,253 - Ac3H11_375 0.59 +1.7 51,739 + -0.7 51,739 + +0.1 51,790 + +0.0 51,791 - -0.2 51,796 + +0.4 51,834 + -1.7 51,834 + -1.1 51,834 + +1.1 51,889 - -1.2 51,889 - -1.3 52,191 + Ac3H11_376 0.70 -3.1
Or see this region's nucleotide sequence