Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3735

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3734 and Ac3H11_3735 are separated by 30 nucleotidesAc3H11_3735 and Ac3H11_3736 are separated by 25 nucleotides Ac3H11_3734 - Oxidoreductase, at 92,952 to 93,947 _3734 Ac3H11_3735 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 93,978 to 94,775 _3735 Ac3H11_3736 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 94,801 to 95,868 _3736 Position (kb) 93 94 95Strain fitness (log2 ratio) -2 -1 0 1 2at 93.225 kb on + strand, within Ac3H11_3734at 93.313 kb on - strand, within Ac3H11_3734at 93.430 kb on + strand, within Ac3H11_3734at 93.430 kb on + strand, within Ac3H11_3734at 93.504 kb on + strand, within Ac3H11_3734at 93.504 kb on + strand, within Ac3H11_3734at 93.531 kb on + strand, within Ac3H11_3734at 93.590 kb on + strand, within Ac3H11_3734at 93.591 kb on - strand, within Ac3H11_3734at 93.591 kb on - strand, within Ac3H11_3734at 93.804 kb on + strand, within Ac3H11_3734at 93.804 kb on + strandat 93.804 kb on + strand, within Ac3H11_3734at 93.804 kb on + strand, within Ac3H11_3734at 93.805 kb on - strand, within Ac3H11_3734at 93.805 kb on - strand, within Ac3H11_3734at 93.805 kb on - strand, within Ac3H11_3734at 93.805 kb on - strand, within Ac3H11_3734at 93.805 kb on - strand, within Ac3H11_3734at 93.805 kb on - strand, within Ac3H11_3734at 93.805 kb on - strand, within Ac3H11_3734at 93.820 kb on - strand, within Ac3H11_3734at 93.906 kb on + strandat 93.907 kb on - strandat 93.907 kb on - strandat 93.942 kb on + strandat 93.942 kb on + strandat 93.942 kb on + strandat 93.943 kb on - strandat 93.943 kb on - strandat 93.955 kb on + strandat 93.956 kb on - strandat 93.979 kb on + strandat 93.979 kb on + strandat 93.980 kb on - strandat 93.980 kb on - strandat 94.077 kb on + strand, within Ac3H11_3735at 94.077 kb on + strand, within Ac3H11_3735at 94.078 kb on - strand, within Ac3H11_3735at 94.078 kb on - strand, within Ac3H11_3735at 94.078 kb on - strand, within Ac3H11_3735at 94.078 kb on - strand, within Ac3H11_3735at 94.102 kb on + strand, within Ac3H11_3735at 94.102 kb on + strand, within Ac3H11_3735at 94.102 kb on + strand, within Ac3H11_3735at 94.103 kb on - strand, within Ac3H11_3735at 94.103 kb on - strand, within Ac3H11_3735at 94.103 kb on - strand, within Ac3H11_3735at 94.103 kb on - strand, within Ac3H11_3735at 94.103 kb on - strand, within Ac3H11_3735at 94.103 kb on - strand, within Ac3H11_3735at 94.103 kb on - strand, within Ac3H11_3735at 94.103 kb on - strand, within Ac3H11_3735at 94.103 kb on - strand, within Ac3H11_3735at 94.103 kb on - strand, within Ac3H11_3735at 94.108 kb on + strand, within Ac3H11_3735at 94.108 kb on + strand, within Ac3H11_3735at 94.108 kb on + strand, within Ac3H11_3735at 94.108 kb on + strand, within Ac3H11_3735at 94.108 kb on + strand, within Ac3H11_3735at 94.108 kb on + strand, within Ac3H11_3735at 94.108 kb on + strand, within Ac3H11_3735at 94.109 kb on - strand, within Ac3H11_3735at 94.109 kb on - strand, within Ac3H11_3735at 94.189 kb on + strand, within Ac3H11_3735at 94.237 kb on + strand, within Ac3H11_3735at 94.238 kb on - strand, within Ac3H11_3735at 94.238 kb on - strand, within Ac3H11_3735at 94.411 kb on + strand, within Ac3H11_3735at 94.411 kb on + strand, within Ac3H11_3735at 94.412 kb on - strand, within Ac3H11_3735at 94.412 kb on - strand, within Ac3H11_3735at 94.412 kb on - strand, within Ac3H11_3735at 94.412 kb on - strand, within Ac3H11_3735at 94.412 kb on - strand, within Ac3H11_3735at 94.412 kb on - strand, within Ac3H11_3735at 94.412 kb on - strand, within Ac3H11_3735at 94.498 kb on + strand, within Ac3H11_3735at 94.498 kb on + strand, within Ac3H11_3735at 94.499 kb on - strand, within Ac3H11_3735at 94.583 kb on + strand, within Ac3H11_3735at 94.663 kb on + strand, within Ac3H11_3735at 94.675 kb on + strand, within Ac3H11_3735at 94.675 kb on + strand, within Ac3H11_3735at 94.731 kb on + strandat 94.731 kb on + strandat 94.741 kb on + strandat 94.777 kb on + strandat 94.777 kb on + strandat 94.777 kb on + strandat 94.777 kb on + strandat 94.778 kb on - strandat 94.778 kb on - strandat 94.778 kb on - strandat 94.778 kb on - strandat 94.778 kb on - strandat 94.847 kb on + strandat 94.907 kb on + strandat 94.908 kb on - strand, within Ac3H11_3736at 94.908 kb on - strand, within Ac3H11_3736at 94.908 kb on - strand, within Ac3H11_3736at 94.908 kb on - strand, within Ac3H11_3736at 94.908 kb on - strand, within Ac3H11_3736at 95.039 kb on + strand, within Ac3H11_3736at 95.040 kb on - strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.064 kb on - strand, within Ac3H11_3736at 95.064 kb on - strand, within Ac3H11_3736at 95.064 kb on - strand, within Ac3H11_3736at 95.065 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.232 kb on - strand, within Ac3H11_3736at 95.480 kb on + strand, within Ac3H11_3736at 95.480 kb on + strand, within Ac3H11_3736at 95.480 kb on + strand, within Ac3H11_3736at 95.481 kb on - strand, within Ac3H11_3736at 95.481 kb on - strand, within Ac3H11_3736at 95.481 kb on - strand, within Ac3H11_3736at 95.481 kb on - strand, within Ac3H11_3736at 95.486 kb on + strand, within Ac3H11_3736at 95.703 kb on - strand, within Ac3H11_3736at 95.703 kb on - strand, within Ac3H11_3736

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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93,225 + Ac3H11_3734 0.27 -0.5
93,313 - Ac3H11_3734 0.36 -0.9
93,430 + Ac3H11_3734 0.48 +0.8
93,430 + Ac3H11_3734 0.48 +0.2
93,504 + Ac3H11_3734 0.55 -0.7
93,504 + Ac3H11_3734 0.55 -0.2
93,531 + Ac3H11_3734 0.58 +1.0
93,590 + Ac3H11_3734 0.64 +0.6
93,591 - Ac3H11_3734 0.64 -0.5
93,591 - Ac3H11_3734 0.64 -0.2
93,804 + Ac3H11_3734 0.86 +0.3
93,804 + +1.9
93,804 + Ac3H11_3734 0.86 -0.4
93,804 + Ac3H11_3734 0.86 +0.4
93,805 - Ac3H11_3734 0.86 +1.0
93,805 - Ac3H11_3734 0.86 +0.0
93,805 - Ac3H11_3734 0.86 +1.4
93,805 - Ac3H11_3734 0.86 -0.3
93,805 - Ac3H11_3734 0.86 +0.0
93,805 - Ac3H11_3734 0.86 -0.6
93,805 - Ac3H11_3734 0.86 +0.3
93,820 - Ac3H11_3734 0.87 -0.1
93,906 + -0.6
93,907 - +0.6
93,907 - -1.5
93,942 + +1.5
93,942 + -0.7
93,942 + -1.0
93,943 - +0.8
93,943 - +0.8
93,955 + -1.0
93,956 - -1.0
93,979 + -1.0
93,979 + -0.6
93,980 - +1.0
93,980 - -0.8
94,077 + Ac3H11_3735 0.12 +0.2
94,077 + Ac3H11_3735 0.12 +0.9
94,078 - Ac3H11_3735 0.13 -1.4
94,078 - Ac3H11_3735 0.13 +1.0
94,078 - Ac3H11_3735 0.13 -1.1
94,078 - Ac3H11_3735 0.13 +0.9
94,102 + Ac3H11_3735 0.16 +1.7
94,102 + Ac3H11_3735 0.16 +0.5
94,102 + Ac3H11_3735 0.16 +0.1
94,103 - Ac3H11_3735 0.16 -0.1
94,103 - Ac3H11_3735 0.16 +1.3
94,103 - Ac3H11_3735 0.16 +0.1
94,103 - Ac3H11_3735 0.16 -0.6
94,103 - Ac3H11_3735 0.16 -0.1
94,103 - Ac3H11_3735 0.16 +0.6
94,103 - Ac3H11_3735 0.16 -0.1
94,103 - Ac3H11_3735 0.16 -1.2
94,103 - Ac3H11_3735 0.16 -0.6
94,103 - Ac3H11_3735 0.16 +0.0
94,108 + Ac3H11_3735 0.16 -1.0
94,108 + Ac3H11_3735 0.16 -0.7
94,108 + Ac3H11_3735 0.16 -0.7
94,108 + Ac3H11_3735 0.16 +0.2
94,108 + Ac3H11_3735 0.16 +1.4
94,108 + Ac3H11_3735 0.16 +0.7
94,108 + Ac3H11_3735 0.16 -0.3
94,109 - Ac3H11_3735 0.16 -0.9
94,109 - Ac3H11_3735 0.16 -1.8
94,189 + Ac3H11_3735 0.26 -0.1
94,237 + Ac3H11_3735 0.32 +0.6
94,238 - Ac3H11_3735 0.33 +0.1
94,238 - Ac3H11_3735 0.33 -0.1
94,411 + Ac3H11_3735 0.54 -2.4
94,411 + Ac3H11_3735 0.54 -0.8
94,412 - Ac3H11_3735 0.54 -0.8
94,412 - Ac3H11_3735 0.54 +0.5
94,412 - Ac3H11_3735 0.54 +1.2
94,412 - Ac3H11_3735 0.54 -1.3
94,412 - Ac3H11_3735 0.54 -0.5
94,412 - Ac3H11_3735 0.54 -0.8
94,412 - Ac3H11_3735 0.54 -0.4
94,498 + Ac3H11_3735 0.65 +0.8
94,498 + Ac3H11_3735 0.65 +0.2
94,499 - Ac3H11_3735 0.65 -0.3
94,583 + Ac3H11_3735 0.76 -0.4
94,663 + Ac3H11_3735 0.86 +0.9
94,675 + Ac3H11_3735 0.87 -0.1
94,675 + Ac3H11_3735 0.87 +0.2
94,731 + +1.0
94,731 + -0.1
94,741 + -1.0
94,777 + -0.7
94,777 + +0.0
94,777 + +1.1
94,777 + -1.6
94,778 - -1.1
94,778 - -0.1
94,778 - -0.7
94,778 - +2.7
94,778 - +0.7
94,847 + +0.8
94,907 + +0.5
94,908 - Ac3H11_3736 0.10 +0.0
94,908 - Ac3H11_3736 0.10 +0.1
94,908 - Ac3H11_3736 0.10 +0.0
94,908 - Ac3H11_3736 0.10 -0.0
94,908 - Ac3H11_3736 0.10 +0.2
95,039 + Ac3H11_3736 0.22 -0.8
95,040 - Ac3H11_3736 0.22 +0.1
95,063 + Ac3H11_3736 0.25 -0.1
95,063 + Ac3H11_3736 0.25 -0.9
95,063 + Ac3H11_3736 0.25 -1.0
95,063 + Ac3H11_3736 0.25 +0.3
95,063 + Ac3H11_3736 0.25 +0.1
95,063 + Ac3H11_3736 0.25 -0.5
95,063 + Ac3H11_3736 0.25 +0.5
95,064 - Ac3H11_3736 0.25 +0.6
95,064 - Ac3H11_3736 0.25 -1.1
95,064 - Ac3H11_3736 0.25 +1.2
95,065 + Ac3H11_3736 0.25 +1.2
95,231 + Ac3H11_3736 0.40 -1.8
95,231 + Ac3H11_3736 0.40 -1.1
95,231 + Ac3H11_3736 0.40 -1.8
95,231 + Ac3H11_3736 0.40 -0.5
95,231 + Ac3H11_3736 0.40 +0.1
95,231 + Ac3H11_3736 0.40 +0.2
95,231 + Ac3H11_3736 0.40 -1.8
95,231 + Ac3H11_3736 0.40 -0.8
95,232 - Ac3H11_3736 0.40 +0.2
95,480 + Ac3H11_3736 0.64 +0.3
95,480 + Ac3H11_3736 0.64 -1.3
95,480 + Ac3H11_3736 0.64 -0.4
95,481 - Ac3H11_3736 0.64 -0.7
95,481 - Ac3H11_3736 0.64 +0.4
95,481 - Ac3H11_3736 0.64 -0.0
95,481 - Ac3H11_3736 0.64 +1.9
95,486 + Ac3H11_3736 0.64 +0.1
95,703 - Ac3H11_3736 0.84 -0.7
95,703 - Ac3H11_3736 0.84 -0.6

Or see this region's nucleotide sequence