Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3511

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3510 and Ac3H11_3511 are separated by 80 nucleotidesAc3H11_3511 and Ac3H11_3512 are separated by 40 nucleotidesAc3H11_3512 and Ac3H11_3513 are separated by 345 nucleotides Ac3H11_3510 - Site-specific DNA methylase, at 57,633 to 58,421 _3510 Ac3H11_3511 - FIG01198229: hypothetical protein, at 58,502 to 59,047 _3511 Ac3H11_3512 - Chromosome 3 SCAF14978, whole genome shotgun sequence, at 59,088 to 59,630 _3512 Ac3H11_3513 - Chemotaxis protein CheV (EC 2.7.3.-), at 59,976 to 60,935 _3513 Position (kb) 58 59 60Strain fitness (log2 ratio) -2 -1 0 1 2at 57.524 kb on + strandat 57.524 kb on + strandat 57.524 kb on + strandat 57.524 kb on + strandat 57.524 kb on + strandat 57.525 kb on - strandat 57.525 kb on - strandat 57.525 kb on - strandat 57.525 kb on - strandat 57.525 kb on - strandat 57.619 kb on - strandat 57.707 kb on + strandat 57.707 kb on + strandat 57.707 kb on + strandat 57.708 kb on - strandat 57.708 kb on - strandat 57.708 kb on - strandat 57.714 kb on + strand, within Ac3H11_3510at 57.715 kb on - strand, within Ac3H11_3510at 57.715 kb on - strand, within Ac3H11_3510at 57.813 kb on + strand, within Ac3H11_3510at 57.951 kb on + strand, within Ac3H11_3510at 57.951 kb on + strand, within Ac3H11_3510at 57.951 kb on + strand, within Ac3H11_3510at 57.952 kb on - strand, within Ac3H11_3510at 58.086 kb on + strand, within Ac3H11_3510at 58.086 kb on + strand, within Ac3H11_3510at 58.087 kb on - strand, within Ac3H11_3510at 58.087 kb on - strand, within Ac3H11_3510at 58.087 kb on - strand, within Ac3H11_3510at 58.087 kb on - strand, within Ac3H11_3510at 58.087 kb on - strand, within Ac3H11_3510at 58.149 kb on + strand, within Ac3H11_3510at 58.150 kb on - strand, within Ac3H11_3510at 58.150 kb on - strand, within Ac3H11_3510at 58.165 kb on - strand, within Ac3H11_3510at 58.182 kb on + strand, within Ac3H11_3510at 58.183 kb on - strand, within Ac3H11_3510at 58.210 kb on - strand, within Ac3H11_3510at 58.210 kb on - strand, within Ac3H11_3510at 58.262 kb on + strand, within Ac3H11_3510at 58.263 kb on - strand, within Ac3H11_3510at 58.263 kb on - strand, within Ac3H11_3510at 58.303 kb on - strand, within Ac3H11_3510at 58.329 kb on + strand, within Ac3H11_3510at 58.329 kb on + strand, within Ac3H11_3510at 58.329 kb on + strand, within Ac3H11_3510at 58.329 kb on + strand, within Ac3H11_3510at 58.329 kb on + strand, within Ac3H11_3510at 58.330 kb on - strand, within Ac3H11_3510at 58.330 kb on - strand, within Ac3H11_3510at 58.330 kb on - strand, within Ac3H11_3510at 58.380 kb on + strandat 58.380 kb on + strandat 58.381 kb on - strandat 58.469 kb on - strandat 58.485 kb on - strandat 58.485 kb on - strandat 58.508 kb on - strandat 58.572 kb on + strand, within Ac3H11_3511at 58.573 kb on - strand, within Ac3H11_3511at 58.642 kb on - strand, within Ac3H11_3511at 58.716 kb on + strand, within Ac3H11_3511at 58.716 kb on + strand, within Ac3H11_3511at 58.717 kb on - strand, within Ac3H11_3511at 58.717 kb on - strand, within Ac3H11_3511at 58.923 kb on + strand, within Ac3H11_3511at 59.149 kb on + strand, within Ac3H11_3512at 59.149 kb on + strand, within Ac3H11_3512at 59.149 kb on + strand, within Ac3H11_3512at 59.150 kb on - strand, within Ac3H11_3512at 59.150 kb on - strand, within Ac3H11_3512at 59.408 kb on - strand, within Ac3H11_3512at 59.408 kb on - strand, within Ac3H11_3512at 59.411 kb on - strand, within Ac3H11_3512at 59.438 kb on - strand, within Ac3H11_3512at 59.459 kb on - strand, within Ac3H11_3512at 59.476 kb on + strand, within Ac3H11_3512at 59.476 kb on + strand, within Ac3H11_3512at 59.476 kb on + strand, within Ac3H11_3512at 59.477 kb on - strand, within Ac3H11_3512at 59.477 kb on - strand, within Ac3H11_3512at 59.477 kb on - strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.497 kb on + strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.498 kb on - strand, within Ac3H11_3512at 59.503 kb on + strand, within Ac3H11_3512at 59.504 kb on - strand, within Ac3H11_3512at 59.504 kb on - strand, within Ac3H11_3512at 59.504 kb on - strand, within Ac3H11_3512at 59.504 kb on - strand, within Ac3H11_3512at 59.504 kb on - strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.518 kb on + strand, within Ac3H11_3512at 59.542 kb on + strand, within Ac3H11_3512at 59.542 kb on + strand, within Ac3H11_3512at 59.542 kb on + strand, within Ac3H11_3512at 59.542 kb on + strand, within Ac3H11_3512at 59.542 kb on + strand, within Ac3H11_3512at 59.543 kb on - strand, within Ac3H11_3512at 59.543 kb on - strand, within Ac3H11_3512at 59.545 kb on + strand, within Ac3H11_3512at 59.623 kb on + strandat 59.623 kb on + strandat 59.623 kb on + strandat 59.623 kb on + strandat 59.624 kb on - strandat 59.624 kb on - strandat 59.624 kb on - strandat 59.624 kb on - strandat 59.624 kb on - strandat 59.709 kb on - strandat 59.748 kb on + strandat 59.748 kb on + strandat 59.749 kb on - strandat 59.846 kb on - strandat 59.862 kb on - strandat 59.862 kb on - strandat 59.977 kb on + strandat 59.977 kb on + strandat 59.977 kb on + strandat 59.977 kb on + strandat 59.977 kb on + strandat 59.978 kb on - strandat 59.978 kb on - strandat 59.978 kb on - strandat 59.978 kb on - strandat 60.037 kb on + strandat 60.037 kb on + strandat 60.038 kb on - strandat 60.038 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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57,524 + +0.6
57,524 + +0.5
57,524 + +0.7
57,524 + -0.3
57,524 + -0.4
57,525 - -0.2
57,525 - -0.9
57,525 - +1.6
57,525 - +0.1
57,525 - -1.0
57,619 - -1.4
57,707 + +0.2
57,707 + +0.8
57,707 + -0.1
57,708 - +0.5
57,708 - -0.8
57,708 - -0.4
57,714 + Ac3H11_3510 0.10 -1.4
57,715 - Ac3H11_3510 0.10 -0.8
57,715 - Ac3H11_3510 0.10 +1.3
57,813 + Ac3H11_3510 0.23 -1.4
57,951 + Ac3H11_3510 0.40 +0.1
57,951 + Ac3H11_3510 0.40 +0.2
57,951 + Ac3H11_3510 0.40 -0.4
57,952 - Ac3H11_3510 0.40 +0.4
58,086 + Ac3H11_3510 0.57 -0.1
58,086 + Ac3H11_3510 0.57 +0.1
58,087 - Ac3H11_3510 0.58 -0.1
58,087 - Ac3H11_3510 0.58 -1.9
58,087 - Ac3H11_3510 0.58 -1.6
58,087 - Ac3H11_3510 0.58 -0.7
58,087 - Ac3H11_3510 0.58 -0.5
58,149 + Ac3H11_3510 0.65 -0.4
58,150 - Ac3H11_3510 0.66 +0.2
58,150 - Ac3H11_3510 0.66 -0.1
58,165 - Ac3H11_3510 0.67 -1.4
58,182 + Ac3H11_3510 0.70 +0.7
58,183 - Ac3H11_3510 0.70 -0.9
58,210 - Ac3H11_3510 0.73 +0.1
58,210 - Ac3H11_3510 0.73 -1.0
58,262 + Ac3H11_3510 0.80 +0.1
58,263 - Ac3H11_3510 0.80 +0.1
58,263 - Ac3H11_3510 0.80 +0.2
58,303 - Ac3H11_3510 0.85 +0.2
58,329 + Ac3H11_3510 0.88 +0.0
58,329 + Ac3H11_3510 0.88 +2.1
58,329 + Ac3H11_3510 0.88 +0.3
58,329 + Ac3H11_3510 0.88 -0.1
58,329 + Ac3H11_3510 0.88 -0.9
58,330 - Ac3H11_3510 0.88 -0.3
58,330 - Ac3H11_3510 0.88 -0.8
58,330 - Ac3H11_3510 0.88 -0.8
58,380 + -1.5
58,380 + +0.4
58,381 - +0.1
58,469 - +0.6
58,485 - -0.9
58,485 - +0.3
58,508 - +1.5
58,572 + Ac3H11_3511 0.13 -0.2
58,573 - Ac3H11_3511 0.13 -1.4
58,642 - Ac3H11_3511 0.26 -0.1
58,716 + Ac3H11_3511 0.39 -0.6
58,716 + Ac3H11_3511 0.39 +0.1
58,717 - Ac3H11_3511 0.39 -1.7
58,717 - Ac3H11_3511 0.39 -2.0
58,923 + Ac3H11_3511 0.77 +0.1
59,149 + Ac3H11_3512 0.11 +0.3
59,149 + Ac3H11_3512 0.11 +0.8
59,149 + Ac3H11_3512 0.11 -0.2
59,150 - Ac3H11_3512 0.11 -0.2
59,150 - Ac3H11_3512 0.11 -0.3
59,408 - Ac3H11_3512 0.59 -1.0
59,408 - Ac3H11_3512 0.59 +0.2
59,411 - Ac3H11_3512 0.59 -1.0
59,438 - Ac3H11_3512 0.64 -0.1
59,459 - Ac3H11_3512 0.68 +0.8
59,476 + Ac3H11_3512 0.71 +0.2
59,476 + Ac3H11_3512 0.71 +0.2
59,476 + Ac3H11_3512 0.71 +0.2
59,477 - Ac3H11_3512 0.72 -0.7
59,477 - Ac3H11_3512 0.72 -0.1
59,477 - Ac3H11_3512 0.72 +0.1
59,497 + Ac3H11_3512 0.75 -2.6
59,497 + Ac3H11_3512 0.75 -0.1
59,497 + Ac3H11_3512 0.75 +0.5
59,497 + Ac3H11_3512 0.75 -2.4
59,497 + Ac3H11_3512 0.75 +0.1
59,497 + Ac3H11_3512 0.75 -0.5
59,498 - Ac3H11_3512 0.76 +0.3
59,498 - Ac3H11_3512 0.76 +0.1
59,498 - Ac3H11_3512 0.76 -0.8
59,498 - Ac3H11_3512 0.76 +1.1
59,498 - Ac3H11_3512 0.76 +0.7
59,498 - Ac3H11_3512 0.76 -1.4
59,503 + Ac3H11_3512 0.76 -0.6
59,504 - Ac3H11_3512 0.77 -0.9
59,504 - Ac3H11_3512 0.77 +0.2
59,504 - Ac3H11_3512 0.77 -1.3
59,504 - Ac3H11_3512 0.77 -1.6
59,504 - Ac3H11_3512 0.77 +0.8
59,518 + Ac3H11_3512 0.79 -0.5
59,518 + Ac3H11_3512 0.79 -1.0
59,518 + Ac3H11_3512 0.79 +1.1
59,518 + Ac3H11_3512 0.79 -0.0
59,518 + Ac3H11_3512 0.79 -0.8
59,518 + Ac3H11_3512 0.79 +2.7
59,542 + Ac3H11_3512 0.84 +0.2
59,542 + Ac3H11_3512 0.84 -0.2
59,542 + Ac3H11_3512 0.84 -0.4
59,542 + Ac3H11_3512 0.84 +1.5
59,542 + Ac3H11_3512 0.84 -0.5
59,543 - Ac3H11_3512 0.84 -1.3
59,543 - Ac3H11_3512 0.84 -0.2
59,545 + Ac3H11_3512 0.84 +0.7
59,623 + -0.1
59,623 + +0.3
59,623 + -1.4
59,623 + -0.3
59,624 - -0.6
59,624 - -0.5
59,624 - -0.0
59,624 - +0.5
59,624 - -0.7
59,709 - -0.5
59,748 + -0.5
59,748 + +0.5
59,749 - -2.1
59,846 - -1.6
59,862 - +0.1
59,862 - +1.7
59,977 + -0.1
59,977 + -0.1
59,977 + -0.1
59,977 + +0.6
59,977 + -0.0
59,978 - +1.1
59,978 - +1.3
59,978 - -0.5
59,978 - -1.5
60,037 + -0.5
60,037 + -0.3
60,038 - -1.2
60,038 - -0.4

Or see this region's nucleotide sequence