Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3168

Experiment: D-Gluconic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3167 and Ac3H11_3168 are separated by 46 nucleotidesAc3H11_3168 and Ac3H11_3169 are separated by 196 nucleotidesAc3H11_3169 and Ac3H11_3170 are separated by 3 nucleotides Ac3H11_3167 - Signal transduction histidine kinase, at 70,470 to 71,399 _3167 Ac3H11_3168 - Response regulator, at 71,446 to 72,759 _3168 Ac3H11_3169 - hypothetical protein, at 72,956 to 73,075 _3169 Ac3H11_3170 - membrane protein, putative, at 73,079 to 74,716 _3170 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 70.448 kb on + strandat 70.448 kb on + strandat 70.448 kb on + strandat 70.448 kb on + strandat 70.448 kb on + strandat 70.449 kb on - strandat 70.449 kb on - strandat 70.449 kb on - strandat 70.449 kb on - strandat 70.535 kb on + strandat 70.536 kb on - strandat 70.695 kb on + strand, within Ac3H11_3167at 70.695 kb on + strand, within Ac3H11_3167at 70.695 kb on + strand, within Ac3H11_3167at 70.696 kb on - strand, within Ac3H11_3167at 70.696 kb on - strand, within Ac3H11_3167at 70.708 kb on + strand, within Ac3H11_3167at 70.729 kb on - strand, within Ac3H11_3167at 70.729 kb on - strand, within Ac3H11_3167at 70.729 kb on - strand, within Ac3H11_3167at 70.790 kb on + strand, within Ac3H11_3167at 70.791 kb on - strand, within Ac3H11_3167at 70.791 kb on - strand, within Ac3H11_3167at 70.809 kb on + strand, within Ac3H11_3167at 70.858 kb on + strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.989 kb on + strand, within Ac3H11_3167at 71.013 kb on + strand, within Ac3H11_3167at 71.014 kb on - strand, within Ac3H11_3167at 71.014 kb on - strand, within Ac3H11_3167at 71.014 kb on - strand, within Ac3H11_3167at 71.062 kb on + strand, within Ac3H11_3167at 71.062 kb on + strand, within Ac3H11_3167at 71.062 kb on + strand, within Ac3H11_3167at 71.062 kb on + strand, within Ac3H11_3167at 71.063 kb on - strand, within Ac3H11_3167at 71.099 kb on + strand, within Ac3H11_3167at 71.100 kb on - strand, within Ac3H11_3167at 71.258 kb on - strand, within Ac3H11_3167at 71.275 kb on - strand, within Ac3H11_3167at 71.275 kb on - strand, within Ac3H11_3167at 71.275 kb on - strand, within Ac3H11_3167at 71.311 kb on + strandat 71.311 kb on + strandat 71.311 kb on + strandat 71.312 kb on - strandat 71.510 kb on + strandat 71.510 kb on + strandat 71.511 kb on - strandat 71.511 kb on - strandat 71.511 kb on - strandat 71.511 kb on - strandat 71.511 kb on - strandat 71.756 kb on + strand, within Ac3H11_3168at 71.782 kb on + strand, within Ac3H11_3168at 71.782 kb on + strand, within Ac3H11_3168at 71.783 kb on - strand, within Ac3H11_3168at 71.788 kb on + strand, within Ac3H11_3168at 71.788 kb on + strand, within Ac3H11_3168at 71.788 kb on + strand, within Ac3H11_3168at 71.789 kb on - strand, within Ac3H11_3168at 71.789 kb on - strand, within Ac3H11_3168at 71.789 kb on - strand, within Ac3H11_3168at 71.998 kb on + strand, within Ac3H11_3168at 72.125 kb on + strand, within Ac3H11_3168at 72.126 kb on - strand, within Ac3H11_3168at 72.126 kb on - strand, within Ac3H11_3168at 72.238 kb on + strand, within Ac3H11_3168at 72.239 kb on - strand, within Ac3H11_3168at 72.239 kb on - strand, within Ac3H11_3168at 72.375 kb on + strand, within Ac3H11_3168at 72.375 kb on + strand, within Ac3H11_3168at 72.375 kb on + strand, within Ac3H11_3168at 72.412 kb on + strand, within Ac3H11_3168at 72.474 kb on + strand, within Ac3H11_3168at 72.626 kb on + strand, within Ac3H11_3168at 72.627 kb on - strand, within Ac3H11_3168at 72.665 kb on + strandat 72.666 kb on - strandat 72.666 kb on - strandat 72.666 kb on - strandat 72.757 kb on + strandat 72.757 kb on + strandat 72.758 kb on - strandat 72.758 kb on - strandat 72.766 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.901 kb on - strandat 72.901 kb on - strandat 72.901 kb on - strandat 72.957 kb on + strandat 72.958 kb on - strandat 72.958 kb on - strandat 72.968 kb on + strand, within Ac3H11_3169at 73.208 kb on - strandat 73.311 kb on - strand, within Ac3H11_3170at 73.607 kb on + strand, within Ac3H11_3170at 73.725 kb on - strand, within Ac3H11_3170at 73.725 kb on - strand, within Ac3H11_3170at 73.725 kb on - strand, within Ac3H11_3170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
remove
70,448 + +2.3
70,448 + +0.2
70,448 + -1.1
70,448 + -0.3
70,448 + +0.2
70,449 - -1.2
70,449 - +1.1
70,449 - -0.9
70,449 - +0.1
70,535 + -0.3
70,536 - +1.2
70,695 + Ac3H11_3167 0.24 -0.4
70,695 + Ac3H11_3167 0.24 +0.7
70,695 + Ac3H11_3167 0.24 +1.6
70,696 - Ac3H11_3167 0.24 -0.8
70,696 - Ac3H11_3167 0.24 +1.1
70,708 + Ac3H11_3167 0.26 +0.6
70,729 - Ac3H11_3167 0.28 +0.9
70,729 - Ac3H11_3167 0.28 -1.5
70,729 - Ac3H11_3167 0.28 -1.2
70,790 + Ac3H11_3167 0.34 -0.2
70,791 - Ac3H11_3167 0.35 -0.3
70,791 - Ac3H11_3167 0.35 -1.1
70,809 + Ac3H11_3167 0.36 -0.8
70,858 + Ac3H11_3167 0.42 -0.6
70,859 - Ac3H11_3167 0.42 +0.5
70,859 - Ac3H11_3167 0.42 +0.2
70,859 - Ac3H11_3167 0.42 -0.9
70,859 - Ac3H11_3167 0.42 +0.1
70,859 - Ac3H11_3167 0.42 +2.3
70,859 - Ac3H11_3167 0.42 +0.0
70,859 - Ac3H11_3167 0.42 +1.0
70,859 - Ac3H11_3167 0.42 +0.3
70,989 + Ac3H11_3167 0.56 +1.0
71,013 + Ac3H11_3167 0.58 +0.7
71,014 - Ac3H11_3167 0.58 -0.9
71,014 - Ac3H11_3167 0.58 +1.9
71,014 - Ac3H11_3167 0.58 +0.9
71,062 + Ac3H11_3167 0.64 +0.4
71,062 + Ac3H11_3167 0.64 +0.6
71,062 + Ac3H11_3167 0.64 +0.3
71,062 + Ac3H11_3167 0.64 -0.0
71,063 - Ac3H11_3167 0.64 -0.3
71,099 + Ac3H11_3167 0.68 -1.0
71,100 - Ac3H11_3167 0.68 +2.1
71,258 - Ac3H11_3167 0.85 +1.4
71,275 - Ac3H11_3167 0.87 -0.0
71,275 - Ac3H11_3167 0.87 -0.9
71,275 - Ac3H11_3167 0.87 -1.0
71,311 + +1.1
71,311 + +1.1
71,311 + -1.5
71,312 - -0.5
71,510 + +1.0
71,510 + -0.7
71,511 - +0.9
71,511 - +0.9
71,511 - -1.2
71,511 - +0.2
71,511 - -0.8
71,756 + Ac3H11_3168 0.24 -0.4
71,782 + Ac3H11_3168 0.26 -0.5
71,782 + Ac3H11_3168 0.26 -1.1
71,783 - Ac3H11_3168 0.26 +1.7
71,788 + Ac3H11_3168 0.26 -0.8
71,788 + Ac3H11_3168 0.26 +0.8
71,788 + Ac3H11_3168 0.26 -0.8
71,789 - Ac3H11_3168 0.26 -1.2
71,789 - Ac3H11_3168 0.26 +0.4
71,789 - Ac3H11_3168 0.26 +1.0
71,998 + Ac3H11_3168 0.42 +0.8
72,125 + Ac3H11_3168 0.52 +0.2
72,126 - Ac3H11_3168 0.52 -1.9
72,126 - Ac3H11_3168 0.52 -0.7
72,238 + Ac3H11_3168 0.60 +2.1
72,239 - Ac3H11_3168 0.60 -0.2
72,239 - Ac3H11_3168 0.60 -0.3
72,375 + Ac3H11_3168 0.71 -0.1
72,375 + Ac3H11_3168 0.71 -0.5
72,375 + Ac3H11_3168 0.71 +1.1
72,412 + Ac3H11_3168 0.74 +0.3
72,474 + Ac3H11_3168 0.78 +1.3
72,626 + Ac3H11_3168 0.90 +1.4
72,627 - Ac3H11_3168 0.90 +0.2
72,665 + +1.7
72,666 - +0.8
72,666 - -0.0
72,666 - -0.4
72,757 + +1.5
72,757 + +0.9
72,758 - +0.8
72,758 - +0.4
72,766 + +0.5
72,900 + -1.1
72,900 + +1.5
72,900 + +0.6
72,900 + +1.3
72,900 + +1.3
72,900 + +0.4
72,901 - +1.0
72,901 - +0.5
72,901 - -1.8
72,957 + +0.3
72,958 - -0.8
72,958 - -0.2
72,968 + Ac3H11_3169 0.10 -1.7
73,208 - -2.5
73,311 - Ac3H11_3170 0.14 +0.8
73,607 + Ac3H11_3170 0.32 -1.0
73,725 - Ac3H11_3170 0.39 +0.6
73,725 - Ac3H11_3170 0.39 +0.7
73,725 - Ac3H11_3170 0.39 -0.0

Or see this region's nucleotide sequence