Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_204 and Ac3H11_205 overlap by 8 nucleotides Ac3H11_205 and Ac3H11_206 are separated by 99 nucleotides Ac3H11_206 and Ac3H11_207 are separated by 216 nucleotides
Ac3H11_204 - Acetate permease ActP (cation/acetate symporter), at 14,142 to 16,241
_204
Ac3H11_205 - FIG152265: Sodium:solute symporter associated protein, at 16,234 to 16,533
_205
Ac3H11_206 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 16,633 to 19,023
_206
Ac3H11_207 - FIG137360: hypothetical protein, at 19,240 to 20,109
_207
Position (kb) 16
17
18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 15.650 kb on + strand, within Ac3H11_204 at 15.651 kb on - strand, within Ac3H11_204 at 15.651 kb on - strand, within Ac3H11_204 at 15.679 kb on + strand, within Ac3H11_204 at 15.679 kb on + strand, within Ac3H11_204 at 15.679 kb on + strand, within Ac3H11_204 at 15.679 kb on + strand, within Ac3H11_204 at 15.679 kb on + strand, within Ac3H11_204 at 15.680 kb on - strand, within Ac3H11_204 at 15.680 kb on - strand, within Ac3H11_204 at 15.680 kb on - strand, within Ac3H11_204 at 15.697 kb on + strand, within Ac3H11_204 at 15.698 kb on - strand, within Ac3H11_204 at 15.698 kb on - strand, within Ac3H11_204 at 15.698 kb on - strand, within Ac3H11_204 at 15.698 kb on - strand, within Ac3H11_204 at 15.698 kb on - strand, within Ac3H11_204 at 15.787 kb on + strand, within Ac3H11_204 at 15.787 kb on + strand, within Ac3H11_204 at 15.787 kb on + strand, within Ac3H11_204 at 15.788 kb on - strand, within Ac3H11_204 at 15.788 kb on - strand, within Ac3H11_204 at 15.788 kb on - strand, within Ac3H11_204 at 15.788 kb on - strand, within Ac3H11_204 at 15.788 kb on - strand, within Ac3H11_204 at 15.788 kb on - strand, within Ac3H11_204 at 15.862 kb on + strand, within Ac3H11_204 at 15.862 kb on + strand, within Ac3H11_204 at 15.863 kb on - strand, within Ac3H11_204 at 15.863 kb on - strand, within Ac3H11_204 at 15.910 kb on + strand, within Ac3H11_204 at 15.911 kb on - strand, within Ac3H11_204 at 15.979 kb on + strand, within Ac3H11_204 at 15.979 kb on + strand, within Ac3H11_204 at 15.979 kb on + strand at 15.979 kb on + strand, within Ac3H11_204 at 15.979 kb on + strand, within Ac3H11_204 at 15.979 kb on + strand, within Ac3H11_204 at 15.979 kb on + strand, within Ac3H11_204 at 15.979 kb on + strand, within Ac3H11_204 at 15.979 kb on + strand, within Ac3H11_204 at 15.980 kb on - strand, within Ac3H11_204 at 15.980 kb on - strand, within Ac3H11_204 at 15.980 kb on - strand, within Ac3H11_204 at 15.980 kb on - strand, within Ac3H11_204 at 15.980 kb on - strand, within Ac3H11_204 at 15.980 kb on - strand, within Ac3H11_204 at 15.980 kb on - strand, within Ac3H11_204 at 16.009 kb on + strand, within Ac3H11_204 at 16.009 kb on + strand, within Ac3H11_204 at 16.009 kb on + strand, within Ac3H11_204 at 16.009 kb on + strand, within Ac3H11_204 at 16.009 kb on + strand, within Ac3H11_204 at 16.009 kb on + strand, within Ac3H11_204 at 16.010 kb on - strand, within Ac3H11_204 at 16.010 kb on - strand, within Ac3H11_204 at 16.010 kb on - strand, within Ac3H11_204 at 16.010 kb on - strand, within Ac3H11_204 at 16.010 kb on - strand, within Ac3H11_204 at 16.010 kb on - strand, within Ac3H11_204 at 16.010 kb on - strand, within Ac3H11_204 at 16.010 kb on - strand, within Ac3H11_204 at 16.010 kb on - strand, within Ac3H11_204 at 16.010 kb on - strand, within Ac3H11_204 at 16.012 kb on + strand, within Ac3H11_204 at 16.012 kb on + strand, within Ac3H11_204 at 16.012 kb on + strand, within Ac3H11_204 at 16.012 kb on + strand, within Ac3H11_204 at 16.013 kb on - strand, within Ac3H11_204 at 16.040 kb on - strand at 16.040 kb on - strand at 16.040 kb on - strand at 16.165 kb on + strand at 16.165 kb on + strand at 16.165 kb on + strand at 16.165 kb on + strand at 16.165 kb on + strand at 16.165 kb on + strand at 16.165 kb on + strand at 16.166 kb on - strand at 16.166 kb on - strand at 16.166 kb on - strand at 16.166 kb on - strand at 16.166 kb on - strand at 16.166 kb on - strand at 16.199 kb on - strand at 16.199 kb on - strand at 16.328 kb on + strand, within Ac3H11_205 at 16.329 kb on - strand, within Ac3H11_205 at 16.329 kb on - strand, within Ac3H11_205 at 16.383 kb on - strand, within Ac3H11_205 at 16.433 kb on + strand, within Ac3H11_205 at 16.433 kb on + strand, within Ac3H11_205 at 16.433 kb on + strand, within Ac3H11_205 at 16.434 kb on - strand, within Ac3H11_205 at 16.434 kb on - strand, within Ac3H11_205 at 16.434 kb on - strand, within Ac3H11_205 at 16.434 kb on - strand, within Ac3H11_205 at 16.434 kb on - strand, within Ac3H11_205 at 16.434 kb on - strand, within Ac3H11_205 at 16.763 kb on + strand at 16.763 kb on + strand at 16.763 kb on + strand at 16.763 kb on + strand at 16.763 kb on + strand at 16.763 kb on + strand at 16.763 kb on + strand at 16.764 kb on - strand at 16.764 kb on - strand at 16.764 kb on - strand at 16.989 kb on + strand, within Ac3H11_206 at 16.990 kb on - strand, within Ac3H11_206 at 16.990 kb on - strand, within Ac3H11_206 at 16.990 kb on - strand, within Ac3H11_206 at 16.990 kb on - strand, within Ac3H11_206 at 17.171 kb on + strand, within Ac3H11_206 at 17.171 kb on + strand, within Ac3H11_206 at 17.172 kb on - strand, within Ac3H11_206 at 17.222 kb on + strand, within Ac3H11_206 at 17.320 kb on + strand, within Ac3H11_206 at 17.320 kb on + strand, within Ac3H11_206 at 17.320 kb on + strand, within Ac3H11_206 at 17.320 kb on + strand, within Ac3H11_206 at 17.321 kb on - strand, within Ac3H11_206 at 17.345 kb on + strand, within Ac3H11_206 at 17.346 kb on - strand, within Ac3H11_206 at 17.621 kb on + strand, within Ac3H11_206 at 17.621 kb on + strand, within Ac3H11_206 at 17.621 kb on + strand, within Ac3H11_206 at 17.622 kb on - strand, within Ac3H11_206 at 17.622 kb on - strand, within Ac3H11_206 at 17.622 kb on - strand, within Ac3H11_206 at 17.622 kb on - strand, within Ac3H11_206 at 17.622 kb on - strand, within Ac3H11_206 at 17.622 kb on - strand, within Ac3H11_206 at 17.718 kb on + strand, within Ac3H11_206 at 17.718 kb on + strand, within Ac3H11_206 at 17.961 kb on - strand, within Ac3H11_206 at 18.023 kb on + strand, within Ac3H11_206 at 18.023 kb on + strand, within Ac3H11_206 at 18.023 kb on + strand, within Ac3H11_206 at 18.023 kb on + strand, within Ac3H11_206 at 18.023 kb on + strand, within Ac3H11_206 at 18.023 kb on + strand, within Ac3H11_206 at 18.024 kb on - strand, within Ac3H11_206 at 18.024 kb on - strand, within Ac3H11_206 at 18.024 kb on - strand, within Ac3H11_206 at 18.024 kb on - strand, within Ac3H11_206 at 18.024 kb on - strand, within Ac3H11_206 at 18.024 kb on - strand, within Ac3H11_206 at 18.077 kb on + strand, within Ac3H11_206 at 18.078 kb on - strand, within Ac3H11_206 at 18.078 kb on - strand, within Ac3H11_206 at 18.299 kb on + strand, within Ac3H11_206 at 18.299 kb on + strand, within Ac3H11_206 at 18.299 kb on + strand, within Ac3H11_206 at 18.299 kb on + strand, within Ac3H11_206 at 18.299 kb on + strand, within Ac3H11_206 at 18.299 kb on + strand, within Ac3H11_206 at 18.299 kb on + strand, within Ac3H11_206 at 18.299 kb on + strand, within Ac3H11_206 at 18.299 kb on + strand, within Ac3H11_206 at 18.299 kb on + strand, within Ac3H11_206 at 18.299 kb on + strand, within Ac3H11_206 at 18.300 kb on - strand, within Ac3H11_206 at 18.300 kb on - strand, within Ac3H11_206 at 18.300 kb on - strand, within Ac3H11_206 at 18.300 kb on - strand, within Ac3H11_206 at 18.300 kb on - strand, within Ac3H11_206 at 18.300 kb on - strand, within Ac3H11_206 at 18.300 kb on - strand, within Ac3H11_206 at 18.300 kb on - strand, within Ac3H11_206 at 18.350 kb on + strand, within Ac3H11_206 at 18.521 kb on + strand, within Ac3H11_206 at 18.521 kb on + strand, within Ac3H11_206 at 18.522 kb on - strand, within Ac3H11_206 at 18.522 kb on - strand, within Ac3H11_206 at 18.522 kb on - strand, within Ac3H11_206 at 18.840 kb on - strand at 18.942 kb on + strand at 18.943 kb on - strand at 18.989 kb on - strand at 19.122 kb on + strand at 19.122 kb on + strand at 19.123 kb on - strand at 19.123 kb on - strand at 19.123 kb on - strand at 19.153 kb on + strand at 19.153 kb on + strand at 19.154 kb on - strand at 19.154 kb on - strand at 19.154 kb on - strand at 19.154 kb on - strand at 19.168 kb on + strand at 19.169 kb on - strand at 19.169 kb on - strand at 19.304 kb on + strand at 19.304 kb on + strand at 19.305 kb on - strand at 19.651 kb on + strand, within Ac3H11_207 at 19.651 kb on + strand, within Ac3H11_207 at 19.652 kb on - strand, within Ac3H11_207 at 19.780 kb on + strand, within Ac3H11_207 at 19.781 kb on - strand, within Ac3H11_207 at 19.781 kb on - strand, within Ac3H11_207 at 19.781 kb on - strand, within Ac3H11_207 at 19.816 kb on + strand, within Ac3H11_207 at 19.816 kb on + strand, within Ac3H11_207 at 19.816 kb on + strand, within Ac3H11_207 at 19.816 kb on + strand, within Ac3H11_207 at 19.817 kb on - strand, within Ac3H11_207 at 19.954 kb on + strand, within Ac3H11_207
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 15,650 + Ac3H11_204 0.72 +0.2 15,651 - Ac3H11_204 0.72 +0.4 15,651 - Ac3H11_204 0.72 +2.1 15,679 + Ac3H11_204 0.73 -0.5 15,679 + Ac3H11_204 0.73 +1.9 15,679 + Ac3H11_204 0.73 -0.5 15,679 + Ac3H11_204 0.73 -0.1 15,679 + Ac3H11_204 0.73 +0.7 15,680 - Ac3H11_204 0.73 -0.4 15,680 - Ac3H11_204 0.73 -0.1 15,680 - Ac3H11_204 0.73 +0.5 15,697 + Ac3H11_204 0.74 +0.2 15,698 - Ac3H11_204 0.74 +0.4 15,698 - Ac3H11_204 0.74 -0.1 15,698 - Ac3H11_204 0.74 +0.2 15,698 - Ac3H11_204 0.74 -1.6 15,698 - Ac3H11_204 0.74 -0.1 15,787 + Ac3H11_204 0.78 +0.1 15,787 + Ac3H11_204 0.78 -0.2 15,787 + Ac3H11_204 0.78 +0.7 15,788 - Ac3H11_204 0.78 +0.1 15,788 - Ac3H11_204 0.78 +0.1 15,788 - Ac3H11_204 0.78 +0.5 15,788 - Ac3H11_204 0.78 +0.3 15,788 - Ac3H11_204 0.78 +0.4 15,788 - Ac3H11_204 0.78 -2.8 15,862 + Ac3H11_204 0.82 +0.8 15,862 + Ac3H11_204 0.82 +1.6 15,863 - Ac3H11_204 0.82 +0.4 15,863 - Ac3H11_204 0.82 +1.6 15,910 + Ac3H11_204 0.84 +1.0 15,911 - Ac3H11_204 0.84 +0.9 15,979 + Ac3H11_204 0.87 -1.5 15,979 + Ac3H11_204 0.87 +0.4 15,979 + +0.3 15,979 + Ac3H11_204 0.87 +0.1 15,979 + Ac3H11_204 0.87 +1.5 15,979 + Ac3H11_204 0.87 +0.3 15,979 + Ac3H11_204 0.87 -0.3 15,979 + Ac3H11_204 0.87 -0.8 15,979 + Ac3H11_204 0.87 -0.4 15,980 - Ac3H11_204 0.88 +1.1 15,980 - Ac3H11_204 0.88 +0.6 15,980 - Ac3H11_204 0.88 +0.3 15,980 - Ac3H11_204 0.88 +1.9 15,980 - Ac3H11_204 0.88 +0.7 15,980 - Ac3H11_204 0.88 +0.9 15,980 - Ac3H11_204 0.88 +0.3 16,009 + Ac3H11_204 0.89 -0.6 16,009 + Ac3H11_204 0.89 -0.8 16,009 + Ac3H11_204 0.89 -0.0 16,009 + Ac3H11_204 0.89 -0.6 16,009 + Ac3H11_204 0.89 +0.7 16,009 + Ac3H11_204 0.89 +0.1 16,010 - Ac3H11_204 0.89 -0.5 16,010 - Ac3H11_204 0.89 +1.5 16,010 - Ac3H11_204 0.89 +0.8 16,010 - Ac3H11_204 0.89 -0.6 16,010 - Ac3H11_204 0.89 +0.2 16,010 - Ac3H11_204 0.89 +0.3 16,010 - Ac3H11_204 0.89 +3.7 16,010 - Ac3H11_204 0.89 -0.5 16,010 - Ac3H11_204 0.89 +1.4 16,010 - Ac3H11_204 0.89 -0.1 16,012 + Ac3H11_204 0.89 +1.5 16,012 + Ac3H11_204 0.89 +0.3 16,012 + Ac3H11_204 0.89 -0.1 16,012 + Ac3H11_204 0.89 -0.3 16,013 - Ac3H11_204 0.89 +0.1 16,040 - +0.2 16,040 - +0.7 16,040 - +1.1 16,165 + +2.8 16,165 + +0.0 16,165 + -0.2 16,165 + +0.2 16,165 + +1.3 16,165 + -0.1 16,165 + +0.2 16,166 - +0.5 16,166 - +0.2 16,166 - -0.1 16,166 - +0.6 16,166 - +1.1 16,166 - -1.5 16,199 - +0.9 16,199 - +0.0 16,328 + Ac3H11_205 0.31 +1.3 16,329 - Ac3H11_205 0.32 -0.7 16,329 - Ac3H11_205 0.32 -0.1 16,383 - Ac3H11_205 0.50 -0.1 16,433 + Ac3H11_205 0.66 +0.5 16,433 + Ac3H11_205 0.66 +2.1 16,433 + Ac3H11_205 0.66 +1.1 16,434 - Ac3H11_205 0.67 -0.9 16,434 - Ac3H11_205 0.67 +2.2 16,434 - Ac3H11_205 0.67 -0.1 16,434 - Ac3H11_205 0.67 +1.2 16,434 - Ac3H11_205 0.67 -0.3 16,434 - Ac3H11_205 0.67 +0.6 16,763 + +0.2 16,763 + -1.2 16,763 + -0.4 16,763 + -2.1 16,763 + -0.5 16,763 + +0.9 16,763 + +2.1 16,764 - -0.4 16,764 - +0.0 16,764 - -1.0 16,989 + Ac3H11_206 0.15 +1.9 16,990 - Ac3H11_206 0.15 -0.8 16,990 - Ac3H11_206 0.15 -1.7 16,990 - Ac3H11_206 0.15 -1.8 16,990 - Ac3H11_206 0.15 -0.5 17,171 + Ac3H11_206 0.23 -0.2 17,171 + Ac3H11_206 0.23 +0.0 17,172 - Ac3H11_206 0.23 +0.4 17,222 + Ac3H11_206 0.25 +0.0 17,320 + Ac3H11_206 0.29 -1.3 17,320 + Ac3H11_206 0.29 -1.6 17,320 + Ac3H11_206 0.29 +1.0 17,320 + Ac3H11_206 0.29 -1.2 17,321 - Ac3H11_206 0.29 -0.9 17,345 + Ac3H11_206 0.30 -0.1 17,346 - Ac3H11_206 0.30 -1.6 17,621 + Ac3H11_206 0.41 -0.8 17,621 + Ac3H11_206 0.41 -0.6 17,621 + Ac3H11_206 0.41 -0.9 17,622 - Ac3H11_206 0.41 -0.4 17,622 - Ac3H11_206 0.41 -2.1 17,622 - Ac3H11_206 0.41 -1.3 17,622 - Ac3H11_206 0.41 -1.1 17,622 - Ac3H11_206 0.41 -0.5 17,622 - Ac3H11_206 0.41 +0.4 17,718 + Ac3H11_206 0.45 +1.1 17,718 + Ac3H11_206 0.45 +0.2 17,961 - Ac3H11_206 0.56 +0.2 18,023 + Ac3H11_206 0.58 -1.0 18,023 + Ac3H11_206 0.58 -0.0 18,023 + Ac3H11_206 0.58 +0.7 18,023 + Ac3H11_206 0.58 -0.8 18,023 + Ac3H11_206 0.58 +1.0 18,023 + Ac3H11_206 0.58 +0.0 18,024 - Ac3H11_206 0.58 -0.9 18,024 - Ac3H11_206 0.58 -0.4 18,024 - Ac3H11_206 0.58 +0.3 18,024 - Ac3H11_206 0.58 +0.5 18,024 - Ac3H11_206 0.58 -1.2 18,024 - Ac3H11_206 0.58 +0.3 18,077 + Ac3H11_206 0.60 -0.3 18,078 - Ac3H11_206 0.60 -1.4 18,078 - Ac3H11_206 0.60 -0.7 18,299 + Ac3H11_206 0.70 +0.2 18,299 + Ac3H11_206 0.70 +0.4 18,299 + Ac3H11_206 0.70 +1.9 18,299 + Ac3H11_206 0.70 -0.6 18,299 + Ac3H11_206 0.70 -0.6 18,299 + Ac3H11_206 0.70 -0.1 18,299 + Ac3H11_206 0.70 +5.2 18,299 + Ac3H11_206 0.70 -2.1 18,299 + Ac3H11_206 0.70 +0.8 18,299 + Ac3H11_206 0.70 -0.3 18,299 + Ac3H11_206 0.70 +0.8 18,300 - Ac3H11_206 0.70 -0.4 18,300 - Ac3H11_206 0.70 +2.6 18,300 - Ac3H11_206 0.70 -1.4 18,300 - Ac3H11_206 0.70 -0.9 18,300 - Ac3H11_206 0.70 -0.2 18,300 - Ac3H11_206 0.70 -0.5 18,300 - Ac3H11_206 0.70 +0.1 18,300 - Ac3H11_206 0.70 +0.0 18,350 + Ac3H11_206 0.72 -0.3 18,521 + Ac3H11_206 0.79 -0.3 18,521 + Ac3H11_206 0.79 +0.5 18,522 - Ac3H11_206 0.79 -1.4 18,522 - Ac3H11_206 0.79 -0.4 18,522 - Ac3H11_206 0.79 +0.1 18,840 - +1.1 18,942 + +0.4 18,943 - -1.0 18,989 - +0.3 19,122 + -1.0 19,122 + +1.8 19,123 - -0.0 19,123 - -1.7 19,123 - -0.4 19,153 + -0.3 19,153 + -0.2 19,154 - -0.3 19,154 - +0.9 19,154 - +0.3 19,154 - -0.3 19,168 + +0.9 19,169 - +0.1 19,169 - +0.1 19,304 + +0.9 19,304 + -0.2 19,305 - -1.1 19,651 + Ac3H11_207 0.47 -1.1 19,651 + Ac3H11_207 0.47 -1.1 19,652 - Ac3H11_207 0.47 -1.8 19,780 + Ac3H11_207 0.62 -1.2 19,781 - Ac3H11_207 0.62 -1.3 19,781 - Ac3H11_207 0.62 -2.6 19,781 - Ac3H11_207 0.62 -1.1 19,816 + Ac3H11_207 0.66 -1.1 19,816 + Ac3H11_207 0.66 +0.1 19,816 + Ac3H11_207 0.66 +0.8 19,816 + Ac3H11_207 0.66 -1.7 19,817 - Ac3H11_207 0.66 -1.3 19,954 + Ac3H11_207 0.82 -2.6
Or see this region's nucleotide sequence