Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25030

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25020 and AO353_25025 are separated by 160 nucleotidesAO353_25025 and AO353_25030 are separated by 47 nucleotidesAO353_25030 and AO353_25035 are separated by 183 nucleotides AO353_25020: AO353_25020 - lysine transporter LysE, at 5,518,574 to 5,519,203 _25020 AO353_25025: AO353_25025 - cupin, at 5,519,364 to 5,519,708 _25025 AO353_25030: AO353_25030 - recombinase, at 5,519,756 to 5,520,736 _25030 AO353_25035: AO353_25035 - integrase, at 5,520,920 to 5,521,888 _25035 Position (kb) 5519 5520 5521Strain fitness (log2 ratio) -2 -1 0 1 2at 5518.761 kb on + strand, within AO353_25020at 5518.762 kb on - strand, within AO353_25020at 5518.762 kb on - strand, within AO353_25020at 5518.762 kb on - strand, within AO353_25020at 5518.762 kb on - strand, within AO353_25020at 5518.802 kb on + strandat 5518.899 kb on + strand, within AO353_25020at 5518.899 kb on + strand, within AO353_25020at 5518.900 kb on - strand, within AO353_25020at 5518.938 kb on - strand, within AO353_25020at 5518.938 kb on - strand, within AO353_25020at 5518.950 kb on + strand, within AO353_25020at 5518.950 kb on + strand, within AO353_25020at 5518.950 kb on + strand, within AO353_25020at 5518.951 kb on - strand, within AO353_25020at 5519.048 kb on + strand, within AO353_25020at 5519.049 kb on - strand, within AO353_25020at 5519.049 kb on - strand, within AO353_25020at 5519.049 kb on - strand, within AO353_25020at 5519.049 kb on - strand, within AO353_25020at 5519.049 kb on - strand, within AO353_25020at 5519.049 kb on - strand, within AO353_25020at 5519.049 kb on - strand, within AO353_25020at 5519.050 kb on + strand, within AO353_25020at 5519.050 kb on + strand, within AO353_25020at 5519.051 kb on - strand, within AO353_25020at 5519.051 kb on - strand, within AO353_25020at 5519.051 kb on - strand, within AO353_25020at 5519.051 kb on - strand, within AO353_25020at 5519.051 kb on - strand, within AO353_25020at 5519.051 kb on - strand, within AO353_25020at 5519.098 kb on + strand, within AO353_25020at 5519.098 kb on + strand, within AO353_25020at 5519.099 kb on - strand, within AO353_25020at 5519.099 kb on - strand, within AO353_25020at 5519.099 kb on - strand, within AO353_25020at 5519.116 kb on + strand, within AO353_25020at 5519.117 kb on - strand, within AO353_25020at 5519.165 kb on + strandat 5519.165 kb on + strandat 5519.166 kb on - strandat 5519.170 kb on + strandat 5519.170 kb on + strandat 5519.178 kb on + strandat 5519.179 kb on - strandat 5519.179 kb on - strandat 5519.179 kb on - strandat 5519.191 kb on + strandat 5519.191 kb on + strandat 5519.191 kb on + strandat 5519.191 kb on + strandat 5519.191 kb on + strandat 5519.192 kb on - strandat 5519.192 kb on - strandat 5519.192 kb on - strandat 5519.192 kb on - strandat 5519.208 kb on + strandat 5519.208 kb on + strandat 5519.208 kb on + strandat 5519.209 kb on - strandat 5519.209 kb on - strandat 5519.209 kb on - strandat 5519.242 kb on - strandat 5519.250 kb on + strandat 5519.250 kb on + strandat 5519.250 kb on + strandat 5519.251 kb on - strandat 5519.251 kb on - strandat 5519.251 kb on - strandat 5519.294 kb on + strandat 5519.295 kb on - strandat 5519.295 kb on - strandat 5519.295 kb on - strandat 5519.323 kb on + strandat 5519.333 kb on + strandat 5519.334 kb on - strandat 5519.381 kb on - strandat 5519.413 kb on + strand, within AO353_25025at 5519.413 kb on + strand, within AO353_25025at 5519.414 kb on - strand, within AO353_25025at 5519.414 kb on - strand, within AO353_25025at 5519.468 kb on + strandat 5519.468 kb on + strand, within AO353_25025at 5519.468 kb on + strand, within AO353_25025at 5519.469 kb on - strand, within AO353_25025at 5519.469 kb on - strand, within AO353_25025at 5519.469 kb on - strand, within AO353_25025at 5519.469 kb on - strand, within AO353_25025at 5519.469 kb on - strand, within AO353_25025at 5519.477 kb on + strand, within AO353_25025at 5519.478 kb on - strand, within AO353_25025at 5519.525 kb on + strand, within AO353_25025at 5519.598 kb on + strand, within AO353_25025at 5519.598 kb on + strand, within AO353_25025at 5519.599 kb on - strand, within AO353_25025at 5519.691 kb on - strandat 5519.744 kb on + strandat 5519.745 kb on - strandat 5519.745 kb on - strandat 5519.859 kb on + strand, within AO353_25030at 5519.859 kb on + strand, within AO353_25030at 5519.860 kb on - strand, within AO353_25030at 5519.860 kb on - strand, within AO353_25030at 5519.860 kb on - strand, within AO353_25030at 5519.895 kb on + strand, within AO353_25030at 5519.895 kb on + strand, within AO353_25030at 5519.895 kb on + strand, within AO353_25030at 5519.896 kb on - strand, within AO353_25030at 5519.896 kb on - strand, within AO353_25030at 5519.896 kb on - strand, within AO353_25030at 5519.896 kb on - strand, within AO353_25030at 5519.896 kb on - strand, within AO353_25030at 5519.896 kb on - strand, within AO353_25030at 5519.896 kb on - strand, within AO353_25030at 5519.896 kb on - strand, within AO353_25030at 5519.932 kb on + strand, within AO353_25030at 5519.973 kb on + strand, within AO353_25030at 5520.129 kb on + strand, within AO353_25030at 5520.129 kb on + strand, within AO353_25030at 5520.130 kb on - strand, within AO353_25030at 5520.203 kb on - strand, within AO353_25030at 5520.203 kb on - strand, within AO353_25030at 5520.216 kb on + strand, within AO353_25030at 5520.216 kb on + strand, within AO353_25030at 5520.216 kb on + strand, within AO353_25030at 5520.216 kb on + strand, within AO353_25030at 5520.217 kb on - strand, within AO353_25030at 5520.217 kb on - strand, within AO353_25030at 5520.217 kb on - strand, within AO353_25030at 5520.217 kb on - strand, within AO353_25030at 5520.529 kb on + strand, within AO353_25030at 5520.530 kb on - strand, within AO353_25030at 5520.591 kb on + strand, within AO353_25030at 5520.796 kb on + strandat 5520.797 kb on - strandat 5520.845 kb on + strandat 5520.936 kb on + strandat 5520.936 kb on + strandat 5520.937 kb on - strandat 5520.937 kb on - strandat 5521.338 kb on + strand, within AO353_25035at 5521.464 kb on + strand, within AO353_25035at 5521.472 kb on + strand, within AO353_25035at 5521.472 kb on + strand, within AO353_25035at 5521.655 kb on + strand, within AO353_25035at 5521.655 kb on + strand, within AO353_25035at 5521.656 kb on - strand, within AO353_25035at 5521.656 kb on - strand, within AO353_25035at 5521.656 kb on - strand, within AO353_25035at 5521.656 kb on - strand, within AO353_25035at 5521.656 kb on - strand, within AO353_25035at 5521.698 kb on + strand, within AO353_25035at 5521.698 kb on + strand, within AO353_25035at 5521.699 kb on - strand, within AO353_25035at 5521.699 kb on - strand, within AO353_25035at 5521.699 kb on - strand, within AO353_25035at 5521.699 kb on - strand, within AO353_25035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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5,518,761 + AO353_25020 0.30 +0.4
5,518,762 - AO353_25020 0.30 +0.7
5,518,762 - AO353_25020 0.30 +0.0
5,518,762 - AO353_25020 0.30 -0.0
5,518,762 - AO353_25020 0.30 +1.0
5,518,802 + -0.4
5,518,899 + AO353_25020 0.52 -0.5
5,518,899 + AO353_25020 0.52 +0.6
5,518,900 - AO353_25020 0.52 -1.2
5,518,938 - AO353_25020 0.58 -0.3
5,518,938 - AO353_25020 0.58 +0.2
5,518,950 + AO353_25020 0.60 -0.2
5,518,950 + AO353_25020 0.60 +0.1
5,518,950 + AO353_25020 0.60 +0.3
5,518,951 - AO353_25020 0.60 -0.6
5,519,048 + AO353_25020 0.75 -0.9
5,519,049 - AO353_25020 0.75 -0.8
5,519,049 - AO353_25020 0.75 +0.2
5,519,049 - AO353_25020 0.75 -0.2
5,519,049 - AO353_25020 0.75 -1.0
5,519,049 - AO353_25020 0.75 +1.4
5,519,049 - AO353_25020 0.75 +0.7
5,519,049 - AO353_25020 0.75 +0.4
5,519,050 + AO353_25020 0.76 -0.3
5,519,050 + AO353_25020 0.76 -0.4
5,519,051 - AO353_25020 0.76 +0.6
5,519,051 - AO353_25020 0.76 +0.6
5,519,051 - AO353_25020 0.76 -0.0
5,519,051 - AO353_25020 0.76 -0.8
5,519,051 - AO353_25020 0.76 -0.4
5,519,051 - AO353_25020 0.76 -0.6
5,519,098 + AO353_25020 0.83 +0.1
5,519,098 + AO353_25020 0.83 -0.6
5,519,099 - AO353_25020 0.83 +0.1
5,519,099 - AO353_25020 0.83 -1.1
5,519,099 - AO353_25020 0.83 -1.6
5,519,116 + AO353_25020 0.86 +0.4
5,519,117 - AO353_25020 0.86 +0.3
5,519,165 + -0.7
5,519,165 + +0.2
5,519,166 - +0.4
5,519,170 + -1.1
5,519,170 + -1.2
5,519,178 + +0.6
5,519,179 - +1.6
5,519,179 - +0.4
5,519,179 - +1.3
5,519,191 + +0.8
5,519,191 + +0.3
5,519,191 + -0.4
5,519,191 + -0.0
5,519,191 + +1.0
5,519,192 - +0.4
5,519,192 - -1.2
5,519,192 - -0.2
5,519,192 - +0.6
5,519,208 + -1.3
5,519,208 + +0.4
5,519,208 + -0.8
5,519,209 - -0.1
5,519,209 - +1.6
5,519,209 - -1.8
5,519,242 - -0.1
5,519,250 + -0.8
5,519,250 + +0.7
5,519,250 + +0.1
5,519,251 - -1.0
5,519,251 - +0.8
5,519,251 - +0.6
5,519,294 + +0.7
5,519,295 - +0.2
5,519,295 - +0.6
5,519,295 - -0.1
5,519,323 + +0.9
5,519,333 + -0.6
5,519,334 - -1.4
5,519,381 - -0.1
5,519,413 + AO353_25025 0.14 +1.4
5,519,413 + AO353_25025 0.14 +1.1
5,519,414 - AO353_25025 0.14 -2.0
5,519,414 - AO353_25025 0.14 -0.6
5,519,468 + -0.0
5,519,468 + AO353_25025 0.30 -1.1
5,519,468 + AO353_25025 0.30 -0.6
5,519,469 - AO353_25025 0.30 +0.6
5,519,469 - AO353_25025 0.30 +0.2
5,519,469 - AO353_25025 0.30 +0.1
5,519,469 - AO353_25025 0.30 -0.8
5,519,469 - AO353_25025 0.30 -1.0
5,519,477 + AO353_25025 0.33 +0.1
5,519,478 - AO353_25025 0.33 +0.3
5,519,525 + AO353_25025 0.47 -1.5
5,519,598 + AO353_25025 0.68 -0.8
5,519,598 + AO353_25025 0.68 +0.1
5,519,599 - AO353_25025 0.68 -2.1
5,519,691 - -0.4
5,519,744 + +0.3
5,519,745 - -0.2
5,519,745 - -2.5
5,519,859 + AO353_25030 0.10 -1.2
5,519,859 + AO353_25030 0.10 +0.4
5,519,860 - AO353_25030 0.11 +0.3
5,519,860 - AO353_25030 0.11 +0.8
5,519,860 - AO353_25030 0.11 +0.2
5,519,895 + AO353_25030 0.14 +0.4
5,519,895 + AO353_25030 0.14 +0.5
5,519,895 + AO353_25030 0.14 +0.3
5,519,896 - AO353_25030 0.14 +2.2
5,519,896 - AO353_25030 0.14 -0.8
5,519,896 - AO353_25030 0.14 -0.4
5,519,896 - AO353_25030 0.14 -1.0
5,519,896 - AO353_25030 0.14 +0.6
5,519,896 - AO353_25030 0.14 -0.5
5,519,896 - AO353_25030 0.14 +0.4
5,519,896 - AO353_25030 0.14 +2.2
5,519,932 + AO353_25030 0.18 +0.2
5,519,973 + AO353_25030 0.22 -1.8
5,520,129 + AO353_25030 0.38 +0.1
5,520,129 + AO353_25030 0.38 +0.0
5,520,130 - AO353_25030 0.38 -0.4
5,520,203 - AO353_25030 0.46 +1.7
5,520,203 - AO353_25030 0.46 -0.8
5,520,216 + AO353_25030 0.47 +1.1
5,520,216 + AO353_25030 0.47 +0.4
5,520,216 + AO353_25030 0.47 -1.9
5,520,216 + AO353_25030 0.47 -0.0
5,520,217 - AO353_25030 0.47 -0.2
5,520,217 - AO353_25030 0.47 -1.3
5,520,217 - AO353_25030 0.47 +1.1
5,520,217 - AO353_25030 0.47 -1.8
5,520,529 + AO353_25030 0.79 +0.1
5,520,530 - AO353_25030 0.79 -0.1
5,520,591 + AO353_25030 0.85 +0.1
5,520,796 + +0.3
5,520,797 - -1.0
5,520,845 + +0.4
5,520,936 + -0.9
5,520,936 + -0.9
5,520,937 - -1.1
5,520,937 - -0.8
5,521,338 + AO353_25035 0.43 +0.2
5,521,464 + AO353_25035 0.56 -0.1
5,521,472 + AO353_25035 0.57 -1.1
5,521,472 + AO353_25035 0.57 +1.3
5,521,655 + AO353_25035 0.76 +0.3
5,521,655 + AO353_25035 0.76 -1.3
5,521,656 - AO353_25035 0.76 -0.9
5,521,656 - AO353_25035 0.76 -0.7
5,521,656 - AO353_25035 0.76 -0.4
5,521,656 - AO353_25035 0.76 +0.6
5,521,656 - AO353_25035 0.76 -0.0
5,521,698 + AO353_25035 0.80 +0.1
5,521,698 + AO353_25035 0.80 +1.2
5,521,699 - AO353_25035 0.80 -1.3
5,521,699 - AO353_25035 0.80 +0.0
5,521,699 - AO353_25035 0.80 -1.8
5,521,699 - AO353_25035 0.80 -2.0

Or see this region's nucleotide sequence