Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22620

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_22615 and AO353_22620 are separated by 699 nucleotides AO353_22615: AO353_22615 - hypothetical protein, at 4,954,222 to 4,954,752 _22615 AO353_22620: AO353_22620 - hypothetical protein, at 4,955,452 to 4,956,285 _22620 Position (kb) 4955 4956 4957Strain fitness (log2 ratio) -2 -1 0 1 2at 4954.470 kb on + strand, within AO353_22615at 4954.531 kb on - strand, within AO353_22615at 4954.633 kb on + strand, within AO353_22615at 4954.675 kb on + strand, within AO353_22615at 4954.676 kb on - strand, within AO353_22615at 4954.678 kb on + strand, within AO353_22615at 4954.704 kb on + strandat 4954.709 kb on + strandat 4954.710 kb on - strandat 4954.710 kb on - strandat 4954.710 kb on - strandat 4954.710 kb on - strandat 4954.710 kb on - strandat 4954.710 kb on - strandat 4954.710 kb on - strandat 4954.735 kb on + strandat 4954.736 kb on - strandat 4954.736 kb on - strandat 4954.757 kb on + strandat 4954.757 kb on + strandat 4954.757 kb on + strandat 4954.758 kb on - strandat 4954.758 kb on - strandat 4954.758 kb on - strandat 4954.758 kb on - strandat 4954.758 kb on - strandat 4954.758 kb on - strandat 4954.758 kb on - strandat 4954.862 kb on + strandat 4954.862 kb on + strandat 4954.863 kb on - strandat 4954.907 kb on + strandat 4954.907 kb on + strandat 4954.908 kb on - strandat 4954.912 kb on - strandat 4954.932 kb on + strandat 4955.006 kb on + strandat 4955.007 kb on - strandat 4955.037 kb on + strandat 4955.037 kb on + strandat 4955.037 kb on + strandat 4955.037 kb on + strandat 4955.037 kb on + strandat 4955.037 kb on + strandat 4955.038 kb on - strandat 4955.038 kb on - strandat 4955.038 kb on - strandat 4955.038 kb on - strandat 4955.038 kb on - strandat 4955.104 kb on + strandat 4955.104 kb on + strandat 4955.105 kb on - strandat 4955.105 kb on - strandat 4955.199 kb on + strandat 4955.209 kb on + strandat 4955.453 kb on + strandat 4955.453 kb on + strandat 4955.453 kb on + strandat 4955.453 kb on + strandat 4955.454 kb on - strandat 4955.454 kb on - strandat 4955.483 kb on - strandat 4955.513 kb on + strandat 4955.533 kb on + strandat 4955.588 kb on - strand, within AO353_22620at 4955.623 kb on - strand, within AO353_22620at 4955.682 kb on - strand, within AO353_22620at 4955.734 kb on + strand, within AO353_22620at 4955.735 kb on - strand, within AO353_22620at 4955.758 kb on - strand, within AO353_22620at 4955.799 kb on + strand, within AO353_22620at 4955.804 kb on - strand, within AO353_22620at 4955.815 kb on + strand, within AO353_22620at 4955.836 kb on - strandat 4955.836 kb on - strandat 4955.897 kb on + strand, within AO353_22620at 4955.947 kb on + strand, within AO353_22620at 4955.948 kb on - strand, within AO353_22620at 4956.015 kb on - strand, within AO353_22620at 4956.028 kb on - strand, within AO353_22620at 4956.053 kb on + strand, within AO353_22620at 4956.053 kb on + strandat 4956.086 kb on - strand, within AO353_22620at 4956.101 kb on - strand, within AO353_22620at 4956.101 kb on - strand, within AO353_22620at 4956.116 kb on + strand, within AO353_22620at 4956.147 kb on + strand, within AO353_22620at 4956.208 kb on - strandat 4956.274 kb on + strandat 4956.274 kb on + strandat 4956.317 kb on - strandat 4956.341 kb on + strandat 4956.446 kb on - strandat 4956.496 kb on - strandat 4956.539 kb on + strandat 4956.539 kb on + strandat 4956.539 kb on + strandat 4956.539 kb on + strandat 4956.539 kb on + strandat 4956.539 kb on + strandat 4956.539 kb on + strandat 4956.539 kb on + strandat 4956.539 kb on + strandat 4956.539 kb on + strandat 4956.539 kb on + strandat 4956.540 kb on - strandat 4956.540 kb on - strandat 4956.540 kb on - strandat 4956.541 kb on + strandat 4956.541 kb on + strandat 4956.542 kb on - strandat 4956.600 kb on + strandat 4956.601 kb on - strandat 4956.711 kb on - strandat 4956.711 kb on - strandat 4956.711 kb on - strandat 4956.711 kb on - strandat 4956.711 kb on - strandat 4956.711 kb on - strandat 4956.711 kb on - strandat 4956.711 kb on - strandat 4956.931 kb on + strandat 4956.931 kb on + strandat 4956.931 kb on + strandat 4956.931 kb on + strandat 4956.931 kb on + strandat 4956.931 kb on + strandat 4956.932 kb on - strandat 4956.932 kb on - strandat 4956.977 kb on + strandat 4956.977 kb on + strandat 4956.978 kb on - strandat 4957.174 kb on + strandat 4957.174 kb on + strandat 4957.174 kb on + strandat 4957.174 kb on + strandat 4957.175 kb on - strandat 4957.175 kb on - strandat 4957.197 kb on + strandat 4957.197 kb on + strandat 4957.258 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
4,954,470 + AO353_22615 0.47 -1.1
4,954,531 - AO353_22615 0.58 -0.4
4,954,633 + AO353_22615 0.77 +0.9
4,954,675 + AO353_22615 0.85 +0.5
4,954,676 - AO353_22615 0.85 -0.1
4,954,678 + AO353_22615 0.86 -0.7
4,954,704 + -0.3
4,954,709 + -1.9
4,954,710 - -0.3
4,954,710 - -0.7
4,954,710 - -0.1
4,954,710 - +1.0
4,954,710 - +0.7
4,954,710 - -1.3
4,954,710 - +0.7
4,954,735 + -0.1
4,954,736 - -0.9
4,954,736 - +0.1
4,954,757 + -0.4
4,954,757 + -1.9
4,954,757 + -1.2
4,954,758 - +0.3
4,954,758 - -0.2
4,954,758 - -1.0
4,954,758 - +1.1
4,954,758 - -0.6
4,954,758 - -0.8
4,954,758 - -0.5
4,954,862 + -0.1
4,954,862 + -0.9
4,954,863 - +0.6
4,954,907 + -1.3
4,954,907 + +0.4
4,954,908 - +0.3
4,954,912 - -0.1
4,954,932 + -0.0
4,955,006 + -0.4
4,955,007 - +1.0
4,955,037 + +0.3
4,955,037 + -0.2
4,955,037 + +0.7
4,955,037 + -0.0
4,955,037 + -1.3
4,955,037 + +0.5
4,955,038 - +0.7
4,955,038 - +0.1
4,955,038 - -0.7
4,955,038 - +1.3
4,955,038 - -0.4
4,955,104 + +0.6
4,955,104 + -1.2
4,955,105 - -0.3
4,955,105 - -0.6
4,955,199 + +1.7
4,955,209 + +0.7
4,955,453 + -0.3
4,955,453 + -0.4
4,955,453 + -1.4
4,955,453 + -0.8
4,955,454 - -0.0
4,955,454 - +0.3
4,955,483 - +0.1
4,955,513 + +2.2
4,955,533 + -0.7
4,955,588 - AO353_22620 0.16 -0.1
4,955,623 - AO353_22620 0.21 -1.5
4,955,682 - AO353_22620 0.28 +0.5
4,955,734 + AO353_22620 0.34 +0.1
4,955,735 - AO353_22620 0.34 +1.0
4,955,758 - AO353_22620 0.37 -0.4
4,955,799 + AO353_22620 0.42 +0.2
4,955,804 - AO353_22620 0.42 +1.2
4,955,815 + AO353_22620 0.44 +0.5
4,955,836 - +0.7
4,955,836 - -0.3
4,955,897 + AO353_22620 0.53 -0.6
4,955,947 + AO353_22620 0.59 +0.9
4,955,948 - AO353_22620 0.59 -0.3
4,956,015 - AO353_22620 0.68 +1.3
4,956,028 - AO353_22620 0.69 +0.1
4,956,053 + AO353_22620 0.72 +0.1
4,956,053 + -0.6
4,956,086 - AO353_22620 0.76 +1.5
4,956,101 - AO353_22620 0.78 -0.1
4,956,101 - AO353_22620 0.78 -0.6
4,956,116 + AO353_22620 0.80 +1.1
4,956,147 + AO353_22620 0.83 +0.9
4,956,208 - -0.3
4,956,274 + +0.3
4,956,274 + -0.3
4,956,317 - -1.3
4,956,341 + -0.3
4,956,446 - -0.2
4,956,496 - -0.3
4,956,539 + +0.7
4,956,539 + -0.7
4,956,539 + +0.5
4,956,539 + +0.0
4,956,539 + +0.1
4,956,539 + -0.5
4,956,539 + -0.1
4,956,539 + +0.5
4,956,539 + +1.1
4,956,539 + -0.6
4,956,539 + -2.3
4,956,540 - -0.8
4,956,540 - +0.2
4,956,540 - -0.8
4,956,541 + -0.5
4,956,541 + +0.9
4,956,542 - -1.5
4,956,600 + -1.1
4,956,601 - +0.3
4,956,711 - -0.7
4,956,711 - -0.1
4,956,711 - -1.6
4,956,711 - -0.3
4,956,711 - -0.1
4,956,711 - -1.9
4,956,711 - -0.3
4,956,711 - -1.3
4,956,931 + -0.7
4,956,931 + -0.7
4,956,931 + -0.5
4,956,931 + +1.3
4,956,931 + -0.2
4,956,931 + -2.0
4,956,932 - +0.9
4,956,932 - -1.1
4,956,977 + -0.9
4,956,977 + -0.6
4,956,978 - -0.4
4,957,174 + +0.6
4,957,174 + -0.2
4,957,174 + -0.4
4,957,174 + +0.2
4,957,175 - -0.4
4,957,175 - +0.1
4,957,197 + +0.2
4,957,197 + -0.4
4,957,258 + +0.0

Or see this region's nucleotide sequence