Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13710

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13705 and AO353_13710 are separated by 3 nucleotidesAO353_13710 and AO353_13715 are separated by 262 nucleotidesAO353_13715 and AO353_13720 are separated by 218 nucleotides AO353_13705: AO353_13705 - hypothetical protein, at 3,045,714 to 3,046,781 _13705 AO353_13710: AO353_13710 - NUDIX hydrolase, at 3,046,785 to 3,047,354 _13710 AO353_13715: AO353_13715 - translation initiation factor Sui1, at 3,047,617 to 3,047,988 _13715 AO353_13720: AO353_13720 - arginine decarboxylase, at 3,048,207 to 3,050,120 _13720 Position (kb) 3046 3047 3048Strain fitness (log2 ratio) -2 -1 0 1 2at 3045.786 kb on + strandat 3045.786 kb on + strandat 3045.786 kb on + strandat 3045.787 kb on - strandat 3045.787 kb on - strandat 3045.787 kb on - strandat 3045.787 kb on - strandat 3045.790 kb on + strandat 3045.790 kb on + strandat 3045.790 kb on + strandat 3045.790 kb on + strandat 3045.790 kb on + strandat 3045.790 kb on + strandat 3045.791 kb on - strandat 3045.791 kb on - strandat 3045.791 kb on - strandat 3045.837 kb on + strand, within AO353_13705at 3045.838 kb on - strand, within AO353_13705at 3045.838 kb on - strand, within AO353_13705at 3045.838 kb on - strand, within AO353_13705at 3045.868 kb on - strand, within AO353_13705at 3046.014 kb on + strand, within AO353_13705at 3046.016 kb on + strand, within AO353_13705at 3046.016 kb on + strand, within AO353_13705at 3046.016 kb on + strand, within AO353_13705at 3046.016 kb on + strand, within AO353_13705at 3046.016 kb on + strand, within AO353_13705at 3046.017 kb on - strand, within AO353_13705at 3046.017 kb on - strand, within AO353_13705at 3046.017 kb on - strand, within AO353_13705at 3046.017 kb on - strand, within AO353_13705at 3046.017 kb on - strand, within AO353_13705at 3046.017 kb on - strand, within AO353_13705at 3046.075 kb on - strand, within AO353_13705at 3046.308 kb on + strand, within AO353_13705at 3046.308 kb on + strand, within AO353_13705at 3046.308 kb on + strand, within AO353_13705at 3046.309 kb on - strand, within AO353_13705at 3046.309 kb on - strand, within AO353_13705at 3046.309 kb on - strand, within AO353_13705at 3046.309 kb on - strand, within AO353_13705at 3046.309 kb on - strand, within AO353_13705at 3046.309 kb on - strand, within AO353_13705at 3046.309 kb on - strand, within AO353_13705at 3046.309 kb on - strand, within AO353_13705at 3046.504 kb on + strand, within AO353_13705at 3046.504 kb on + strand, within AO353_13705at 3046.504 kb on + strand, within AO353_13705at 3046.504 kb on + strand, within AO353_13705at 3046.504 kb on + strand, within AO353_13705at 3046.504 kb on + strand, within AO353_13705at 3046.505 kb on - strand, within AO353_13705at 3046.505 kb on - strand, within AO353_13705at 3046.505 kb on - strand, within AO353_13705at 3046.505 kb on - strand, within AO353_13705at 3046.505 kb on - strand, within AO353_13705at 3046.505 kb on - strand, within AO353_13705at 3046.505 kb on - strand, within AO353_13705at 3046.505 kb on - strand, within AO353_13705at 3046.505 kb on - strand, within AO353_13705at 3046.509 kb on + strand, within AO353_13705at 3046.509 kb on + strand, within AO353_13705at 3046.509 kb on + strand, within AO353_13705at 3046.509 kb on + strand, within AO353_13705at 3046.509 kb on + strand, within AO353_13705at 3046.509 kb on + strand, within AO353_13705at 3046.509 kb on + strand, within AO353_13705at 3046.509 kb on + strand, within AO353_13705at 3046.510 kb on - strand, within AO353_13705at 3046.510 kb on - strand, within AO353_13705at 3046.510 kb on - strand, within AO353_13705at 3046.510 kb on - strand, within AO353_13705at 3046.510 kb on - strand, within AO353_13705at 3046.722 kb on + strandat 3046.722 kb on + strandat 3046.722 kb on + strandat 3046.722 kb on + strandat 3046.722 kb on + strandat 3046.722 kb on + strandat 3046.722 kb on + strandat 3046.722 kb on + strandat 3046.722 kb on + strandat 3046.722 kb on + strandat 3046.723 kb on - strandat 3046.723 kb on - strandat 3046.723 kb on - strandat 3046.723 kb on - strandat 3046.723 kb on - strandat 3046.723 kb on - strandat 3046.723 kb on - strandat 3046.723 kb on - strandat 3046.723 kb on - strandat 3046.723 kb on - strandat 3046.723 kb on - strandat 3046.723 kb on - strandat 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.926 kb on + strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.927 kb on - strand, within AO353_13710at 3046.992 kb on + strand, within AO353_13710at 3046.992 kb on + strand, within AO353_13710at 3046.993 kb on - strand, within AO353_13710at 3046.993 kb on - strand, within AO353_13710at 3046.993 kb on - strand, within AO353_13710at 3047.046 kb on + strand, within AO353_13710at 3047.046 kb on + strand, within AO353_13710at 3047.047 kb on - strand, within AO353_13710at 3047.225 kb on + strand, within AO353_13710at 3047.226 kb on - strand, within AO353_13710at 3047.226 kb on - strand, within AO353_13710at 3047.268 kb on + strand, within AO353_13710at 3047.302 kb on - strandat 3047.350 kb on + strandat 3047.350 kb on + strandat 3047.350 kb on + strandat 3047.351 kb on - strandat 3047.351 kb on - strandat 3047.351 kb on - strandat 3047.351 kb on - strandat 3047.351 kb on - strandat 3047.352 kb on + strandat 3047.353 kb on - strandat 3047.374 kb on + strandat 3047.374 kb on + strandat 3047.374 kb on + strandat 3047.374 kb on + strandat 3047.374 kb on + strandat 3047.375 kb on - strandat 3047.375 kb on - strandat 3047.396 kb on + strandat 3047.397 kb on - strandat 3047.414 kb on + strandat 3047.414 kb on + strandat 3047.414 kb on + strandat 3047.415 kb on - strandat 3047.415 kb on - strandat 3047.415 kb on - strandat 3047.415 kb on - strandat 3047.442 kb on + strandat 3047.442 kb on + strandat 3047.442 kb on + strandat 3047.442 kb on + strandat 3047.442 kb on + strandat 3047.443 kb on - strandat 3047.443 kb on - strandat 3047.443 kb on - strandat 3047.455 kb on + strandat 3047.456 kb on - strandat 3047.456 kb on - strandat 3047.515 kb on + strandat 3047.516 kb on - strandat 3047.519 kb on + strandat 3047.519 kb on + strandat 3047.520 kb on - strandat 3047.520 kb on - strandat 3047.520 kb on - strandat 3047.660 kb on + strand, within AO353_13715at 3047.660 kb on + strand, within AO353_13715at 3047.697 kb on + strand, within AO353_13715at 3047.698 kb on - strand, within AO353_13715at 3047.698 kb on - strand, within AO353_13715at 3047.933 kb on + strand, within AO353_13715at 3047.933 kb on + strand, within AO353_13715at 3047.933 kb on + strand, within AO353_13715at 3047.933 kb on + strand, within AO353_13715at 3047.933 kb on + strand, within AO353_13715at 3047.934 kb on - strand, within AO353_13715at 3048.087 kb on + strandat 3048.112 kb on + strandat 3048.148 kb on + strandat 3048.148 kb on + strandat 3048.149 kb on - strandat 3048.149 kb on - strandat 3048.149 kb on - strandat 3048.194 kb on - strandat 3048.194 kb on - strandat 3048.194 kb on - strandat 3048.194 kb on - strandat 3048.195 kb on + strandat 3048.196 kb on - strandat 3048.196 kb on - strandat 3048.196 kb on - strandat 3048.196 kb on - strandat 3048.214 kb on + strandat 3048.300 kb on + strandat 3048.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,045,786 + +1.0
3,045,786 + -0.2
3,045,786 + +0.8
3,045,787 - +0.7
3,045,787 - -0.9
3,045,787 - -1.3
3,045,787 - +1.7
3,045,790 + -0.8
3,045,790 + -1.5
3,045,790 + +0.6
3,045,790 + +0.7
3,045,790 + -0.3
3,045,790 + -1.3
3,045,791 - +0.9
3,045,791 - +0.1
3,045,791 - -0.2
3,045,837 + AO353_13705 0.12 -0.1
3,045,838 - AO353_13705 0.12 -0.6
3,045,838 - AO353_13705 0.12 -0.1
3,045,838 - AO353_13705 0.12 +0.3
3,045,868 - AO353_13705 0.14 -0.4
3,046,014 + AO353_13705 0.28 -1.3
3,046,016 + AO353_13705 0.28 +0.1
3,046,016 + AO353_13705 0.28 -0.1
3,046,016 + AO353_13705 0.28 +0.8
3,046,016 + AO353_13705 0.28 -2.4
3,046,016 + AO353_13705 0.28 -0.4
3,046,017 - AO353_13705 0.28 +0.1
3,046,017 - AO353_13705 0.28 +1.1
3,046,017 - AO353_13705 0.28 -0.0
3,046,017 - AO353_13705 0.28 -0.2
3,046,017 - AO353_13705 0.28 -0.9
3,046,017 - AO353_13705 0.28 -1.5
3,046,075 - AO353_13705 0.34 +0.5
3,046,308 + AO353_13705 0.56 +0.1
3,046,308 + AO353_13705 0.56 -0.2
3,046,308 + AO353_13705 0.56 -0.0
3,046,309 - AO353_13705 0.56 -1.4
3,046,309 - AO353_13705 0.56 -1.3
3,046,309 - AO353_13705 0.56 -0.7
3,046,309 - AO353_13705 0.56 +0.6
3,046,309 - AO353_13705 0.56 -1.1
3,046,309 - AO353_13705 0.56 -0.7
3,046,309 - AO353_13705 0.56 -0.8
3,046,309 - AO353_13705 0.56 -0.4
3,046,504 + AO353_13705 0.74 -1.7
3,046,504 + AO353_13705 0.74 +0.0
3,046,504 + AO353_13705 0.74 +0.2
3,046,504 + AO353_13705 0.74 -1.3
3,046,504 + AO353_13705 0.74 -0.5
3,046,504 + AO353_13705 0.74 -0.2
3,046,505 - AO353_13705 0.74 +0.4
3,046,505 - AO353_13705 0.74 -0.0
3,046,505 - AO353_13705 0.74 -0.6
3,046,505 - AO353_13705 0.74 -0.0
3,046,505 - AO353_13705 0.74 -0.2
3,046,505 - AO353_13705 0.74 -0.2
3,046,505 - AO353_13705 0.74 -0.4
3,046,505 - AO353_13705 0.74 -0.4
3,046,505 - AO353_13705 0.74 -0.8
3,046,509 + AO353_13705 0.74 -0.6
3,046,509 + AO353_13705 0.74 -0.2
3,046,509 + AO353_13705 0.74 -1.0
3,046,509 + AO353_13705 0.74 -0.0
3,046,509 + AO353_13705 0.74 +0.7
3,046,509 + AO353_13705 0.74 -0.5
3,046,509 + AO353_13705 0.74 -1.4
3,046,509 + AO353_13705 0.74 +0.0
3,046,510 - AO353_13705 0.75 -0.3
3,046,510 - AO353_13705 0.75 +0.8
3,046,510 - AO353_13705 0.75 +0.0
3,046,510 - AO353_13705 0.75 +1.4
3,046,510 - AO353_13705 0.75 +1.0
3,046,722 + -1.7
3,046,722 + +0.1
3,046,722 + -2.0
3,046,722 + -0.2
3,046,722 + -0.7
3,046,722 + +1.2
3,046,722 + -0.0
3,046,722 + +0.6
3,046,722 + -0.1
3,046,722 + -1.9
3,046,723 - -0.2
3,046,723 - -1.4
3,046,723 - +0.3
3,046,723 - +1.0
3,046,723 - -1.0
3,046,723 - +0.0
3,046,723 - +0.2
3,046,723 - +0.4
3,046,723 - +0.3
3,046,723 - -0.2
3,046,723 - +1.0
3,046,723 - +0.7
3,046,926 + AO353_13710 0.25 -0.2
3,046,926 + AO353_13710 0.25 +1.0
3,046,926 + AO353_13710 0.25 +0.1
3,046,926 + AO353_13710 0.25 -0.4
3,046,926 + AO353_13710 0.25 +0.9
3,046,926 + AO353_13710 0.25 +1.1
3,046,926 + AO353_13710 0.25 +0.3
3,046,926 + AO353_13710 0.25 +2.0
3,046,926 + AO353_13710 0.25 -1.3
3,046,926 + AO353_13710 0.25 +0.4
3,046,926 + AO353_13710 0.25 +0.8
3,046,926 + AO353_13710 0.25 +0.9
3,046,926 + AO353_13710 0.25 -0.3
3,046,926 + AO353_13710 0.25 -0.0
3,046,926 + AO353_13710 0.25 -0.4
3,046,926 + AO353_13710 0.25 -0.6
3,046,926 + AO353_13710 0.25 +0.7
3,046,926 + AO353_13710 0.25 -0.0
3,046,926 + AO353_13710 0.25 +0.9
3,046,926 + AO353_13710 0.25 -0.5
3,046,926 + AO353_13710 0.25 +0.5
3,046,926 + AO353_13710 0.25 +0.7
3,046,926 + AO353_13710 0.25 +0.3
3,046,926 + AO353_13710 0.25 +0.5
3,046,927 - AO353_13710 0.25 -0.0
3,046,927 - AO353_13710 0.25 +0.4
3,046,927 - AO353_13710 0.25 +0.5
3,046,927 - AO353_13710 0.25 -0.6
3,046,927 - AO353_13710 0.25 +0.5
3,046,927 - AO353_13710 0.25 +0.2
3,046,927 - AO353_13710 0.25 +0.7
3,046,927 - AO353_13710 0.25 -0.9
3,046,927 - AO353_13710 0.25 -2.2
3,046,927 - AO353_13710 0.25 +1.5
3,046,927 - AO353_13710 0.25 -0.8
3,046,927 - AO353_13710 0.25 -0.7
3,046,927 - AO353_13710 0.25 -0.2
3,046,927 - AO353_13710 0.25 +0.8
3,046,992 + AO353_13710 0.36 +0.1
3,046,992 + AO353_13710 0.36 -0.0
3,046,993 - AO353_13710 0.36 +0.3
3,046,993 - AO353_13710 0.36 -0.5
3,046,993 - AO353_13710 0.36 +0.6
3,047,046 + AO353_13710 0.46 -0.0
3,047,046 + AO353_13710 0.46 -0.1
3,047,047 - AO353_13710 0.46 +0.7
3,047,225 + AO353_13710 0.77 -0.1
3,047,226 - AO353_13710 0.77 +0.0
3,047,226 - AO353_13710 0.77 +1.4
3,047,268 + AO353_13710 0.85 +0.7
3,047,302 - +1.3
3,047,350 + -1.8
3,047,350 + +0.4
3,047,350 + +1.2
3,047,351 - +1.3
3,047,351 - +0.1
3,047,351 - -0.3
3,047,351 - -0.6
3,047,351 - +0.8
3,047,352 + -1.1
3,047,353 - +0.1
3,047,374 + +0.1
3,047,374 + -0.5
3,047,374 + -1.0
3,047,374 + -0.3
3,047,374 + +0.9
3,047,375 - -1.0
3,047,375 - +0.1
3,047,396 + +0.9
3,047,397 - +1.6
3,047,414 + -0.8
3,047,414 + -0.3
3,047,414 + -0.2
3,047,415 - +0.4
3,047,415 - +2.4
3,047,415 - -0.3
3,047,415 - -0.2
3,047,442 + +0.2
3,047,442 + +0.1
3,047,442 + +0.6
3,047,442 + -0.2
3,047,442 + +0.0
3,047,443 - +0.3
3,047,443 - -0.1
3,047,443 - +1.9
3,047,455 + -0.2
3,047,456 - +0.7
3,047,456 - +0.4
3,047,515 + +0.1
3,047,516 - -0.2
3,047,519 + -0.4
3,047,519 + -0.2
3,047,520 - -0.5
3,047,520 - +1.7
3,047,520 - -0.8
3,047,660 + AO353_13715 0.12 +0.5
3,047,660 + AO353_13715 0.12 +0.0
3,047,697 + AO353_13715 0.22 +0.5
3,047,698 - AO353_13715 0.22 -1.1
3,047,698 - AO353_13715 0.22 +1.5
3,047,933 + AO353_13715 0.85 +0.2
3,047,933 + AO353_13715 0.85 -1.9
3,047,933 + AO353_13715 0.85 +0.7
3,047,933 + AO353_13715 0.85 +0.0
3,047,933 + AO353_13715 0.85 +0.2
3,047,934 - AO353_13715 0.85 +0.5
3,048,087 + -0.7
3,048,112 + -0.2
3,048,148 + -0.6
3,048,148 + +0.1
3,048,149 - -0.2
3,048,149 - +1.0
3,048,149 - -0.2
3,048,194 - +0.3
3,048,194 - +0.8
3,048,194 - +0.1
3,048,194 - -1.3
3,048,195 + +0.1
3,048,196 - +1.3
3,048,196 - +1.4
3,048,196 - -0.9
3,048,196 - +0.7
3,048,214 + -1.0
3,048,300 + -0.9
3,048,329 - -0.2

Or see this region's nucleotide sequence