Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04915

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04910 and AO353_04915 overlap by 4 nucleotidesAO353_04915 and AO353_04920 are separated by 202 nucleotides AO353_04910: AO353_04910 - sugar ABC transporter substrate-binding protein, at 1,086,237 to 1,087,226 _04910 AO353_04915: AO353_04915 - RNA polymerase subunit sigma-24, at 1,087,223 to 1,087,795 _04915 AO353_04920: AO353_04920 - alpha/beta hydrolase, at 1,087,998 to 1,088,900 _04920 Position (kb) 1087 1088Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1086.248 kb on + strandat 1086.248 kb on + strandat 1086.248 kb on + strandat 1086.248 kb on + strandat 1086.249 kb on - strandat 1086.249 kb on - strandat 1086.249 kb on - strandat 1086.397 kb on + strand, within AO353_04910at 1086.439 kb on + strand, within AO353_04910at 1086.439 kb on + strand, within AO353_04910at 1086.439 kb on + strand, within AO353_04910at 1086.440 kb on - strand, within AO353_04910at 1086.440 kb on - strand, within AO353_04910at 1086.440 kb on - strand, within AO353_04910at 1086.440 kb on - strand, within AO353_04910at 1086.440 kb on - strand, within AO353_04910at 1086.442 kb on + strand, within AO353_04910at 1086.442 kb on + strand, within AO353_04910at 1086.442 kb on + strand, within AO353_04910at 1086.442 kb on + strand, within AO353_04910at 1086.442 kb on + strand, within AO353_04910at 1086.442 kb on + strand, within AO353_04910at 1086.443 kb on - strand, within AO353_04910at 1086.443 kb on - strand, within AO353_04910at 1086.443 kb on - strand, within AO353_04910at 1086.443 kb on - strand, within AO353_04910at 1086.443 kb on - strand, within AO353_04910at 1086.443 kb on - strand, within AO353_04910at 1086.443 kb on - strand, within AO353_04910at 1086.521 kb on - strand, within AO353_04910at 1086.521 kb on - strand, within AO353_04910at 1086.598 kb on - strand, within AO353_04910at 1086.598 kb on - strand, within AO353_04910at 1086.598 kb on - strand, within AO353_04910at 1086.598 kb on - strand, within AO353_04910at 1086.850 kb on + strand, within AO353_04910at 1086.850 kb on + strand, within AO353_04910at 1086.850 kb on + strand, within AO353_04910at 1086.850 kb on + strand, within AO353_04910at 1086.851 kb on - strand, within AO353_04910at 1086.851 kb on - strand, within AO353_04910at 1086.851 kb on - strand, within AO353_04910at 1086.851 kb on - strand, within AO353_04910at 1086.851 kb on - strand, within AO353_04910at 1086.851 kb on - strand, within AO353_04910at 1086.851 kb on - strand, within AO353_04910at 1086.994 kb on + strand, within AO353_04910at 1086.994 kb on + strand, within AO353_04910at 1087.031 kb on + strand, within AO353_04910at 1087.031 kb on + strand, within AO353_04910at 1087.032 kb on - strand, within AO353_04910at 1087.078 kb on + strand, within AO353_04910at 1087.297 kb on + strand, within AO353_04915at 1087.297 kb on + strand, within AO353_04915at 1087.297 kb on + strand, within AO353_04915at 1087.297 kb on + strand, within AO353_04915at 1087.298 kb on - strand, within AO353_04915at 1087.298 kb on - strand, within AO353_04915at 1087.298 kb on - strand, within AO353_04915at 1087.298 kb on - strand, within AO353_04915at 1087.298 kb on - strand, within AO353_04915at 1087.298 kb on - strand, within AO353_04915at 1087.350 kb on + strand, within AO353_04915at 1087.351 kb on - strand, within AO353_04915at 1087.351 kb on - strand, within AO353_04915at 1087.351 kb on - strand, within AO353_04915at 1087.538 kb on + strand, within AO353_04915at 1087.538 kb on + strand, within AO353_04915at 1087.538 kb on + strand, within AO353_04915at 1087.538 kb on + strand, within AO353_04915at 1087.538 kb on + strand, within AO353_04915at 1087.538 kb on + strand, within AO353_04915at 1087.538 kb on + strand, within AO353_04915at 1087.539 kb on - strand, within AO353_04915at 1087.539 kb on - strand, within AO353_04915at 1087.539 kb on - strand, within AO353_04915at 1087.578 kb on + strand, within AO353_04915at 1087.578 kb on + strand, within AO353_04915at 1087.578 kb on + strand, within AO353_04915at 1087.578 kb on + strand, within AO353_04915at 1087.579 kb on - strand, within AO353_04915at 1087.579 kb on - strand, within AO353_04915at 1087.579 kb on - strand, within AO353_04915at 1087.625 kb on + strand, within AO353_04915at 1087.625 kb on + strand, within AO353_04915at 1087.626 kb on - strand, within AO353_04915at 1087.626 kb on - strand, within AO353_04915at 1087.626 kb on - strand, within AO353_04915at 1087.626 kb on - strand, within AO353_04915at 1087.718 kb on + strand, within AO353_04915at 1087.718 kb on + strand, within AO353_04915at 1087.718 kb on + strand, within AO353_04915at 1087.718 kb on + strand, within AO353_04915at 1087.719 kb on - strand, within AO353_04915at 1087.719 kb on - strand, within AO353_04915at 1087.731 kb on + strand, within AO353_04915at 1087.732 kb on - strand, within AO353_04915at 1087.786 kb on + strandat 1087.786 kb on + strandat 1087.787 kb on - strandat 1087.787 kb on - strandat 1087.787 kb on - strandat 1087.825 kb on + strandat 1087.826 kb on - strandat 1088.053 kb on + strandat 1088.053 kb on + strandat 1088.053 kb on + strandat 1088.054 kb on - strandat 1088.054 kb on - strandat 1088.109 kb on + strand, within AO353_04920at 1088.109 kb on + strand, within AO353_04920at 1088.109 kb on + strand, within AO353_04920at 1088.110 kb on - strand, within AO353_04920at 1088.110 kb on - strand, within AO353_04920at 1088.115 kb on + strand, within AO353_04920at 1088.115 kb on + strand, within AO353_04920at 1088.115 kb on + strand, within AO353_04920at 1088.116 kb on - strand, within AO353_04920at 1088.116 kb on - strand, within AO353_04920at 1088.250 kb on + strand, within AO353_04920at 1088.250 kb on + strand, within AO353_04920at 1088.250 kb on + strand, within AO353_04920at 1088.251 kb on - strand, within AO353_04920at 1088.251 kb on - strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.269 kb on + strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.270 kb on - strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.534 kb on + strand, within AO353_04920at 1088.535 kb on - strand, within AO353_04920at 1088.535 kb on - strand, within AO353_04920at 1088.535 kb on - strand, within AO353_04920at 1088.535 kb on - strand, within AO353_04920at 1088.572 kb on + strand, within AO353_04920at 1088.572 kb on + strand, within AO353_04920at 1088.614 kb on + strand, within AO353_04920at 1088.614 kb on + strand, within AO353_04920at 1088.614 kb on + strand, within AO353_04920at 1088.615 kb on - strand, within AO353_04920at 1088.615 kb on - strand, within AO353_04920at 1088.615 kb on - strand, within AO353_04920at 1088.615 kb on - strand, within AO353_04920at 1088.615 kb on - strand, within AO353_04920at 1088.615 kb on - strand, within AO353_04920at 1088.659 kb on + strand, within AO353_04920at 1088.659 kb on + strand, within AO353_04920at 1088.659 kb on + strand, within AO353_04920at 1088.659 kb on + strand, within AO353_04920at 1088.660 kb on - strand, within AO353_04920at 1088.660 kb on - strand, within AO353_04920at 1088.660 kb on - strand, within AO353_04920at 1088.660 kb on - strand, within AO353_04920at 1088.749 kb on + strand, within AO353_04920at 1088.750 kb on - strand, within AO353_04920at 1088.750 kb on - strand, within AO353_04920at 1088.750 kb on - strand, within AO353_04920at 1088.750 kb on - strand, within AO353_04920at 1088.750 kb on - strand, within AO353_04920at 1088.750 kb on - strand, within AO353_04920

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,086,248 + +0.9
1,086,248 + -0.2
1,086,248 + +0.4
1,086,248 + -1.0
1,086,249 - +0.5
1,086,249 - -0.5
1,086,249 - -0.4
1,086,397 + AO353_04910 0.16 +0.0
1,086,439 + AO353_04910 0.20 +0.4
1,086,439 + AO353_04910 0.20 +0.5
1,086,439 + AO353_04910 0.20 +0.6
1,086,440 - AO353_04910 0.21 +0.4
1,086,440 - AO353_04910 0.21 -1.8
1,086,440 - AO353_04910 0.21 +1.2
1,086,440 - AO353_04910 0.21 +0.9
1,086,440 - AO353_04910 0.21 +0.7
1,086,442 + AO353_04910 0.21 +0.5
1,086,442 + AO353_04910 0.21 -1.4
1,086,442 + AO353_04910 0.21 +0.2
1,086,442 + AO353_04910 0.21 +0.1
1,086,442 + AO353_04910 0.21 -0.5
1,086,442 + AO353_04910 0.21 +0.1
1,086,443 - AO353_04910 0.21 -1.9
1,086,443 - AO353_04910 0.21 +0.7
1,086,443 - AO353_04910 0.21 -0.1
1,086,443 - AO353_04910 0.21 -1.1
1,086,443 - AO353_04910 0.21 -0.2
1,086,443 - AO353_04910 0.21 -1.2
1,086,443 - AO353_04910 0.21 -1.0
1,086,521 - AO353_04910 0.29 +1.1
1,086,521 - AO353_04910 0.29 +1.0
1,086,598 - AO353_04910 0.36 +0.5
1,086,598 - AO353_04910 0.36 -0.0
1,086,598 - AO353_04910 0.36 -1.1
1,086,598 - AO353_04910 0.36 -1.9
1,086,850 + AO353_04910 0.62 -0.8
1,086,850 + AO353_04910 0.62 +0.4
1,086,850 + AO353_04910 0.62 -0.1
1,086,850 + AO353_04910 0.62 -0.2
1,086,851 - AO353_04910 0.62 +1.2
1,086,851 - AO353_04910 0.62 -0.8
1,086,851 - AO353_04910 0.62 -0.1
1,086,851 - AO353_04910 0.62 -0.2
1,086,851 - AO353_04910 0.62 -0.5
1,086,851 - AO353_04910 0.62 +0.9
1,086,851 - AO353_04910 0.62 -0.6
1,086,994 + AO353_04910 0.76 -0.7
1,086,994 + AO353_04910 0.76 -0.7
1,087,031 + AO353_04910 0.80 -0.4
1,087,031 + AO353_04910 0.80 -0.7
1,087,032 - AO353_04910 0.80 +1.7
1,087,078 + AO353_04910 0.85 +0.7
1,087,297 + AO353_04915 0.13 +0.7
1,087,297 + AO353_04915 0.13 +0.5
1,087,297 + AO353_04915 0.13 -0.1
1,087,297 + AO353_04915 0.13 +0.5
1,087,298 - AO353_04915 0.13 +0.8
1,087,298 - AO353_04915 0.13 +0.1
1,087,298 - AO353_04915 0.13 -0.3
1,087,298 - AO353_04915 0.13 -0.0
1,087,298 - AO353_04915 0.13 +0.1
1,087,298 - AO353_04915 0.13 +0.2
1,087,350 + AO353_04915 0.22 -0.5
1,087,351 - AO353_04915 0.22 -0.1
1,087,351 - AO353_04915 0.22 -0.3
1,087,351 - AO353_04915 0.22 +0.1
1,087,538 + AO353_04915 0.55 +0.5
1,087,538 + AO353_04915 0.55 -0.3
1,087,538 + AO353_04915 0.55 -0.8
1,087,538 + AO353_04915 0.55 +0.1
1,087,538 + AO353_04915 0.55 +0.5
1,087,538 + AO353_04915 0.55 +0.4
1,087,538 + AO353_04915 0.55 +0.3
1,087,539 - AO353_04915 0.55 -1.2
1,087,539 - AO353_04915 0.55 +0.6
1,087,539 - AO353_04915 0.55 -0.1
1,087,578 + AO353_04915 0.62 +0.3
1,087,578 + AO353_04915 0.62 -0.2
1,087,578 + AO353_04915 0.62 +2.1
1,087,578 + AO353_04915 0.62 +1.9
1,087,579 - AO353_04915 0.62 +1.2
1,087,579 - AO353_04915 0.62 +0.8
1,087,579 - AO353_04915 0.62 -1.5
1,087,625 + AO353_04915 0.70 -0.2
1,087,625 + AO353_04915 0.70 +0.1
1,087,626 - AO353_04915 0.70 +1.6
1,087,626 - AO353_04915 0.70 -0.0
1,087,626 - AO353_04915 0.70 -0.0
1,087,626 - AO353_04915 0.70 +0.5
1,087,718 + AO353_04915 0.86 +0.7
1,087,718 + AO353_04915 0.86 +0.1
1,087,718 + AO353_04915 0.86 +1.5
1,087,718 + AO353_04915 0.86 +1.5
1,087,719 - AO353_04915 0.87 -0.5
1,087,719 - AO353_04915 0.87 +0.2
1,087,731 + AO353_04915 0.89 -1.0
1,087,732 - AO353_04915 0.89 +0.1
1,087,786 + -0.0
1,087,786 + +0.7
1,087,787 - -0.3
1,087,787 - -0.8
1,087,787 - +1.1
1,087,825 + -0.8
1,087,826 - -1.4
1,088,053 + -1.1
1,088,053 + +0.4
1,088,053 + +0.7
1,088,054 - +2.2
1,088,054 - -0.6
1,088,109 + AO353_04920 0.12 +0.8
1,088,109 + AO353_04920 0.12 -0.6
1,088,109 + AO353_04920 0.12 -1.5
1,088,110 - AO353_04920 0.12 -0.2
1,088,110 - AO353_04920 0.12 -0.4
1,088,115 + AO353_04920 0.13 -2.8
1,088,115 + AO353_04920 0.13 +1.0
1,088,115 + AO353_04920 0.13 +0.0
1,088,116 - AO353_04920 0.13 -0.1
1,088,116 - AO353_04920 0.13 +0.3
1,088,250 + AO353_04920 0.28 -0.6
1,088,250 + AO353_04920 0.28 +1.6
1,088,250 + AO353_04920 0.28 -0.4
1,088,251 - AO353_04920 0.28 +1.6
1,088,251 - AO353_04920 0.28 +0.5
1,088,269 + AO353_04920 0.30 -0.6
1,088,269 + AO353_04920 0.30 +0.8
1,088,269 + AO353_04920 0.30 +0.2
1,088,269 + AO353_04920 0.30 -0.6
1,088,269 + AO353_04920 0.30 -0.8
1,088,269 + AO353_04920 0.30 +0.4
1,088,269 + AO353_04920 0.30 +0.2
1,088,269 + AO353_04920 0.30 -1.2
1,088,269 + AO353_04920 0.30 +0.5
1,088,269 + AO353_04920 0.30 +0.1
1,088,269 + AO353_04920 0.30 +0.9
1,088,269 + AO353_04920 0.30 -0.4
1,088,269 + AO353_04920 0.30 +0.5
1,088,269 + AO353_04920 0.30 +0.7
1,088,269 + AO353_04920 0.30 -0.3
1,088,270 - AO353_04920 0.30 -0.8
1,088,270 - AO353_04920 0.30 -0.6
1,088,270 - AO353_04920 0.30 +0.1
1,088,270 - AO353_04920 0.30 -1.4
1,088,270 - AO353_04920 0.30 +0.5
1,088,270 - AO353_04920 0.30 -0.6
1,088,270 - AO353_04920 0.30 +1.0
1,088,270 - AO353_04920 0.30 -0.3
1,088,270 - AO353_04920 0.30 +0.8
1,088,270 - AO353_04920 0.30 -0.5
1,088,270 - AO353_04920 0.30 -0.7
1,088,270 - AO353_04920 0.30 +0.7
1,088,270 - AO353_04920 0.30 +0.0
1,088,270 - AO353_04920 0.30 +2.7
1,088,534 + AO353_04920 0.59 -0.7
1,088,534 + AO353_04920 0.59 -0.9
1,088,534 + AO353_04920 0.59 -0.1
1,088,534 + AO353_04920 0.59 +1.7
1,088,534 + AO353_04920 0.59 +0.1
1,088,534 + AO353_04920 0.59 +0.5
1,088,534 + AO353_04920 0.59 +0.2
1,088,534 + AO353_04920 0.59 -0.5
1,088,534 + AO353_04920 0.59 +0.4
1,088,534 + AO353_04920 0.59 +0.0
1,088,534 + AO353_04920 0.59 +1.2
1,088,534 + AO353_04920 0.59 +0.2
1,088,535 - AO353_04920 0.59 +0.3
1,088,535 - AO353_04920 0.59 +0.6
1,088,535 - AO353_04920 0.59 +0.4
1,088,535 - AO353_04920 0.59 +0.8
1,088,572 + AO353_04920 0.64 -1.3
1,088,572 + AO353_04920 0.64 -1.5
1,088,614 + AO353_04920 0.68 +1.7
1,088,614 + AO353_04920 0.68 +0.1
1,088,614 + AO353_04920 0.68 +0.2
1,088,615 - AO353_04920 0.68 +0.2
1,088,615 - AO353_04920 0.68 -0.7
1,088,615 - AO353_04920 0.68 +0.4
1,088,615 - AO353_04920 0.68 +0.7
1,088,615 - AO353_04920 0.68 +1.2
1,088,615 - AO353_04920 0.68 -1.1
1,088,659 + AO353_04920 0.73 -0.5
1,088,659 + AO353_04920 0.73 -0.9
1,088,659 + AO353_04920 0.73 -0.8
1,088,659 + AO353_04920 0.73 +0.2
1,088,660 - AO353_04920 0.73 -0.4
1,088,660 - AO353_04920 0.73 -0.1
1,088,660 - AO353_04920 0.73 -0.3
1,088,660 - AO353_04920 0.73 +0.8
1,088,749 + AO353_04920 0.83 +0.5
1,088,750 - AO353_04920 0.83 -0.9
1,088,750 - AO353_04920 0.83 +0.2
1,088,750 - AO353_04920 0.83 +1.4
1,088,750 - AO353_04920 0.83 -0.6
1,088,750 - AO353_04920 0.83 +0.1
1,088,750 - AO353_04920 0.83 -0.6

Or see this region's nucleotide sequence