Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00155 and AO353_00160 are separated by 169 nucleotides AO353_00160 and AO353_00165 are separated by 52 nucleotides AO353_00165 and AO353_00170 overlap by 4 nucleotides AO353_00170 and AO353_00175 overlap by 4 nucleotides AO353_00175 and AO353_00180 are separated by 68 nucleotides AO353_00180 and AO353_00185 overlap by 1 nucleotides AO353_00185 and AO353_00190 are separated by 6 nucleotides
AO353_00155: AO353_00155 - phage tail protein, at 31,562 to 33,547
_00155
AO353_00160: AO353_00160 - hypothetical protein, at 33,717 to 34,007
_00160
AO353_00165: AO353_00165 - lysis protein, at 34,060 to 34,527
_00165
AO353_00170: AO353_00170 - lysozyme, at 34,524 to 35,051
_00170
AO353_00175: AO353_00175 - hypothetical protein, at 35,048 to 35,302
_00175
AO353_00180: AO353_00180 - conjugal transfer protein TraR, at 35,371 to 35,580
_00180
AO353_00185: AO353_00185 - phage tail protein, at 35,580 to 36,032
_00185
AO353_00190: AO353_00190 - phage tail protein, at 36,039 to 37,154
_00190
Position (kb) 34
35
36 Strain fitness (log2 ratio) -2
-1
0
1 at 33.583 kb on - strand at 33.586 kb on + strand at 33.587 kb on - strand at 33.587 kb on - strand at 33.612 kb on - strand at 33.612 kb on - strand at 33.612 kb on - strand at 33.878 kb on + strand, within AO353_00160 at 33.878 kb on + strand, within AO353_00160 at 33.879 kb on - strand, within AO353_00160 at 33.879 kb on - strand, within AO353_00160 at 33.879 kb on - strand, within AO353_00160 at 33.922 kb on + strand, within AO353_00160 at 33.922 kb on + strand, within AO353_00160 at 33.922 kb on + strand, within AO353_00160 at 33.923 kb on - strand, within AO353_00160 at 33.923 kb on - strand, within AO353_00160 at 33.923 kb on - strand, within AO353_00160 at 34.013 kb on - strand at 34.030 kb on + strand at 34.031 kb on - strand at 34.031 kb on - strand at 34.142 kb on + strand, within AO353_00165 at 34.142 kb on + strand, within AO353_00165 at 34.142 kb on + strand, within AO353_00165 at 34.142 kb on + strand, within AO353_00165 at 34.143 kb on - strand, within AO353_00165 at 34.335 kb on + strand, within AO353_00165 at 34.335 kb on + strand, within AO353_00165 at 34.463 kb on + strand, within AO353_00165 at 34.463 kb on + strand, within AO353_00165 at 34.463 kb on + strand, within AO353_00165 at 34.463 kb on + strand, within AO353_00165 at 34.463 kb on + strand, within AO353_00165 at 34.464 kb on - strand, within AO353_00165 at 34.464 kb on - strand, within AO353_00165 at 34.498 kb on + strand at 34.498 kb on + strand at 34.498 kb on + strand at 34.521 kb on + strand at 34.522 kb on - strand at 34.522 kb on - strand at 34.586 kb on + strand, within AO353_00170 at 34.712 kb on + strand, within AO353_00170 at 34.861 kb on + strand, within AO353_00170 at 34.862 kb on - strand, within AO353_00170 at 34.862 kb on - strand, within AO353_00170 at 35.003 kb on + strand at 35.004 kb on - strand at 35.004 kb on - strand at 35.004 kb on - strand at 35.379 kb on + strand at 35.614 kb on + strand at 35.659 kb on + strand, within AO353_00185 at 35.849 kb on + strand, within AO353_00185 at 35.849 kb on + strand, within AO353_00185 at 35.850 kb on - strand, within AO353_00185 at 36.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 33,583 - +0.0 33,586 + +0.5 33,587 - -0.9 33,587 - +0.5 33,612 - -0.0 33,612 - +0.3 33,612 - -1.1 33,878 + AO353_00160 0.55 -0.2 33,878 + AO353_00160 0.55 +0.3 33,879 - AO353_00160 0.56 +0.1 33,879 - AO353_00160 0.56 -0.9 33,879 - AO353_00160 0.56 -0.2 33,922 + AO353_00160 0.70 -0.7 33,922 + AO353_00160 0.70 +0.1 33,922 + AO353_00160 0.70 +0.5 33,923 - AO353_00160 0.71 +0.2 33,923 - AO353_00160 0.71 +1.6 33,923 - AO353_00160 0.71 -0.0 34,013 - -0.1 34,030 + -0.5 34,031 - -0.7 34,031 - -1.0 34,142 + AO353_00165 0.18 -0.5 34,142 + AO353_00165 0.18 -0.2 34,142 + AO353_00165 0.18 +0.7 34,142 + AO353_00165 0.18 -0.1 34,143 - AO353_00165 0.18 -2.0 34,335 + AO353_00165 0.59 -0.0 34,335 + AO353_00165 0.59 +0.1 34,463 + AO353_00165 0.86 +0.1 34,463 + AO353_00165 0.86 -1.0 34,463 + AO353_00165 0.86 -0.5 34,463 + AO353_00165 0.86 -0.1 34,463 + AO353_00165 0.86 -0.9 34,464 - AO353_00165 0.86 -0.4 34,464 - AO353_00165 0.86 +0.0 34,498 + +0.2 34,498 + +0.3 34,498 + +0.2 34,521 + -0.2 34,522 - -2.2 34,522 - +1.3 34,586 + AO353_00170 0.12 +1.2 34,712 + AO353_00170 0.36 -0.5 34,861 + AO353_00170 0.64 +0.6 34,862 - AO353_00170 0.64 -0.4 34,862 - AO353_00170 0.64 +1.2 35,003 + +0.5 35,004 - +0.6 35,004 - +0.4 35,004 - +1.2 35,379 + -0.7 35,614 + -0.9 35,659 + AO353_00185 0.17 +0.1 35,849 + AO353_00185 0.59 -0.9 35,849 + AO353_00185 0.59 -1.1 35,850 - AO353_00185 0.60 -0.3 36,041 - -0.4
Or see this region's nucleotide sequence