Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS18405

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS18395 and ABIE51_RS18400 are separated by 77 nucleotidesABIE51_RS18400 and ABIE51_RS18405 are separated by 10 nucleotidesABIE51_RS18405 and ABIE51_RS18410 are separated by 260 nucleotidesABIE51_RS18410 and ABIE51_RS18415 are separated by 413 nucleotides ABIE51_RS18395: ABIE51_RS18395 - F0F1 ATP synthase subunit C, at 4,013,296 to 4,013,574 _RS18395 ABIE51_RS18400: ABIE51_RS18400 - F0F1 ATP synthase subunit A, at 4,013,652 to 4,014,482 _RS18400 ABIE51_RS18405: ABIE51_RS18405 - hypothetical protein, at 4,014,493 to 4,014,861 _RS18405 ABIE51_RS18410: ABIE51_RS18410 - DUF2061 domain-containing protein, at 4,015,122 to 4,015,340 _RS18410 ABIE51_RS18415: ABIE51_RS18415 - hypothetical protein, at 4,015,754 to 4,016,560 _RS18415 Position (kb) 4014 4015Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4013.612 kb on - strandat 4013.612 kb on - strandat 4013.612 kb on - strandat 4013.612 kb on - strandat 4014.495 kb on - strandat 4014.518 kb on - strandat 4014.916 kb on - strandat 4014.916 kb on - strandat 4014.917 kb on + strandat 4014.918 kb on - strandat 4014.918 kb on - strandat 4014.918 kb on - strandat 4014.930 kb on - strandat 4014.930 kb on - strandat 4015.027 kb on + strandat 4015.028 kb on - strandat 4015.028 kb on - strandat 4015.038 kb on + strandat 4015.039 kb on - strandat 4015.087 kb on + strandat 4015.087 kb on + strandat 4015.087 kb on + strandat 4015.088 kb on - strandat 4015.179 kb on + strand, within ABIE51_RS18410at 4015.179 kb on + strand, within ABIE51_RS18410at 4015.179 kb on + strand, within ABIE51_RS18410at 4015.180 kb on - strand, within ABIE51_RS18410at 4015.180 kb on - strand, within ABIE51_RS18410at 4015.449 kb on + strandat 4015.449 kb on + strandat 4015.449 kb on + strandat 4015.449 kb on + strandat 4015.450 kb on - strandat 4015.450 kb on - strandat 4015.450 kb on - strandat 4015.450 kb on - strandat 4015.720 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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4,013,612 - -3.9
4,013,612 - +0.5
4,013,612 - +0.3
4,013,612 - -1.1
4,014,495 - +0.4
4,014,518 - +1.0
4,014,916 - +1.8
4,014,916 - +0.5
4,014,917 + +0.3
4,014,918 - -0.1
4,014,918 - -0.7
4,014,918 - -0.6
4,014,930 - -1.2
4,014,930 - -0.5
4,015,027 + +0.3
4,015,028 - -0.7
4,015,028 - +0.1
4,015,038 + +0.3
4,015,039 - +1.1
4,015,087 + -0.2
4,015,087 + -0.2
4,015,087 + +0.4
4,015,088 - +1.1
4,015,179 + ABIE51_RS18410 0.26 +0.3
4,015,179 + ABIE51_RS18410 0.26 +0.2
4,015,179 + ABIE51_RS18410 0.26 +1.0
4,015,180 - ABIE51_RS18410 0.26 -0.2
4,015,180 - ABIE51_RS18410 0.26 +0.1
4,015,449 + +0.8
4,015,449 + -0.1
4,015,449 + +0.8
4,015,449 + +0.2
4,015,450 - -0.2
4,015,450 - -0.2
4,015,450 - +1.1
4,015,450 - +0.8
4,015,720 + +0.6

Or see this region's nucleotide sequence