Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS15410

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS15400 and ABIE51_RS15405 overlap by 4 nucleotidesABIE51_RS15405 and ABIE51_RS15410 are separated by 20 nucleotidesABIE51_RS15410 and ABIE51_RS15415 are separated by 108 nucleotidesABIE51_RS15415 and ABIE51_RS15420 are separated by 145 nucleotides ABIE51_RS15400: ABIE51_RS15400 - Trm112 family protein, at 3,343,505 to 3,343,774 _RS15400 ABIE51_RS15405: ABIE51_RS15405 - carboxylating nicotinate-nucleotide diphosphorylase, at 3,343,771 to 3,344,637 _RS15405 ABIE51_RS15410: ABIE51_RS15410 - FHA domain-containing protein, at 3,344,658 to 3,345,458 _RS15410 ABIE51_RS15415: ABIE51_RS15415 - DUF3301 domain-containing protein, at 3,345,567 to 3,345,887 _RS15415 ABIE51_RS15420: ABIE51_RS15420 - ClpXP protease specificity-enhancing factor, at 3,346,033 to 3,346,527 _RS15420 Position (kb) 3344 3345 3346Strain fitness (log2 ratio) -1 0 1 2at 3343.691 kb on + strand, within ABIE51_RS15400at 3343.691 kb on + strand, within ABIE51_RS15400at 3343.691 kb on + strand, within ABIE51_RS15400at 3343.805 kb on + strandat 3343.806 kb on - strandat 3343.806 kb on - strandat 3343.895 kb on - strand, within ABIE51_RS15405at 3343.895 kb on - strand, within ABIE51_RS15405at 3344.061 kb on - strand, within ABIE51_RS15405at 3344.061 kb on - strand, within ABIE51_RS15405at 3344.128 kb on + strand, within ABIE51_RS15405at 3344.142 kb on - strand, within ABIE51_RS15405at 3344.142 kb on - strand, within ABIE51_RS15405at 3344.209 kb on + strand, within ABIE51_RS15405at 3344.209 kb on + strand, within ABIE51_RS15405at 3344.209 kb on + strand, within ABIE51_RS15405at 3344.210 kb on - strand, within ABIE51_RS15405at 3344.210 kb on - strand, within ABIE51_RS15405at 3344.659 kb on + strandat 3344.659 kb on + strandat 3344.979 kb on - strand, within ABIE51_RS15410at 3345.574 kb on + strandat 3345.574 kb on + strandat 3345.575 kb on - strandat 3345.730 kb on - strand, within ABIE51_RS15415at 3345.730 kb on - strand, within ABIE51_RS15415at 3345.990 kb on + strandat 3345.990 kb on + strandat 3345.991 kb on - strandat 3345.991 kb on - strandat 3346.238 kb on + strand, within ABIE51_RS15420at 3346.238 kb on + strand, within ABIE51_RS15420at 3346.239 kb on - strand, within ABIE51_RS15420at 3346.239 kb on - strand, within ABIE51_RS15420at 3346.339 kb on + strand, within ABIE51_RS15420

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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3,343,691 + ABIE51_RS15400 0.69 -1.1
3,343,691 + ABIE51_RS15400 0.69 +2.3
3,343,691 + ABIE51_RS15400 0.69 -1.0
3,343,805 + +0.1
3,343,806 - +0.6
3,343,806 - +0.4
3,343,895 - ABIE51_RS15405 0.14 -1.1
3,343,895 - ABIE51_RS15405 0.14 +0.6
3,344,061 - ABIE51_RS15405 0.33 +0.2
3,344,061 - ABIE51_RS15405 0.33 -0.1
3,344,128 + ABIE51_RS15405 0.41 -0.1
3,344,142 - ABIE51_RS15405 0.43 +1.3
3,344,142 - ABIE51_RS15405 0.43 +0.6
3,344,209 + ABIE51_RS15405 0.51 -0.5
3,344,209 + ABIE51_RS15405 0.51 -0.4
3,344,209 + ABIE51_RS15405 0.51 -0.1
3,344,210 - ABIE51_RS15405 0.51 +2.7
3,344,210 - ABIE51_RS15405 0.51 +1.3
3,344,659 + -0.5
3,344,659 + -0.1
3,344,979 - ABIE51_RS15410 0.40 +0.8
3,345,574 + -0.3
3,345,574 + -0.0
3,345,575 - -0.4
3,345,730 - ABIE51_RS15415 0.51 -1.0
3,345,730 - ABIE51_RS15415 0.51 -0.4
3,345,990 + -0.5
3,345,990 + -1.0
3,345,991 - -0.8
3,345,991 - -1.6
3,346,238 + ABIE51_RS15420 0.41 +0.1
3,346,238 + ABIE51_RS15420 0.41 -0.1
3,346,239 - ABIE51_RS15420 0.42 -0.1
3,346,239 - ABIE51_RS15420 0.42 +1.4
3,346,339 + ABIE51_RS15420 0.62 -0.1

Or see this region's nucleotide sequence