Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS15400 and ABIE51_RS15405 overlap by 4 nucleotides ABIE51_RS15405 and ABIE51_RS15410 are separated by 20 nucleotides ABIE51_RS15410 and ABIE51_RS15415 are separated by 108 nucleotides ABIE51_RS15415 and ABIE51_RS15420 are separated by 145 nucleotides
ABIE51_RS15400: ABIE51_RS15400 - Trm112 family protein, at 3,343,505 to 3,343,774
_RS15400
ABIE51_RS15405: ABIE51_RS15405 - carboxylating nicotinate-nucleotide diphosphorylase, at 3,343,771 to 3,344,637
_RS15405
ABIE51_RS15410: ABIE51_RS15410 - FHA domain-containing protein, at 3,344,658 to 3,345,458
_RS15410
ABIE51_RS15415: ABIE51_RS15415 - DUF3301 domain-containing protein, at 3,345,567 to 3,345,887
_RS15415
ABIE51_RS15420: ABIE51_RS15420 - ClpXP protease specificity-enhancing factor, at 3,346,033 to 3,346,527
_RS15420
Position (kb)
3344
3345
3346 Strain fitness (log2 ratio)
-1
0
1
2 at 3343.691 kb on + strand, within ABIE51_RS15400 at 3343.691 kb on + strand, within ABIE51_RS15400 at 3343.691 kb on + strand, within ABIE51_RS15400 at 3343.805 kb on + strand at 3343.806 kb on - strand at 3343.806 kb on - strand at 3343.895 kb on - strand, within ABIE51_RS15405 at 3343.895 kb on - strand, within ABIE51_RS15405 at 3344.061 kb on - strand, within ABIE51_RS15405 at 3344.061 kb on - strand, within ABIE51_RS15405 at 3344.128 kb on + strand, within ABIE51_RS15405 at 3344.142 kb on - strand, within ABIE51_RS15405 at 3344.142 kb on - strand, within ABIE51_RS15405 at 3344.209 kb on + strand, within ABIE51_RS15405 at 3344.209 kb on + strand, within ABIE51_RS15405 at 3344.209 kb on + strand, within ABIE51_RS15405 at 3344.210 kb on - strand, within ABIE51_RS15405 at 3344.210 kb on - strand, within ABIE51_RS15405 at 3344.659 kb on + strand at 3344.659 kb on + strand at 3344.979 kb on - strand, within ABIE51_RS15410 at 3345.574 kb on + strand at 3345.574 kb on + strand at 3345.575 kb on - strand at 3345.730 kb on - strand, within ABIE51_RS15415 at 3345.730 kb on - strand, within ABIE51_RS15415 at 3345.990 kb on + strand at 3345.990 kb on + strand at 3345.991 kb on - strand at 3345.991 kb on - strand at 3346.238 kb on + strand, within ABIE51_RS15420 at 3346.238 kb on + strand, within ABIE51_RS15420 at 3346.239 kb on - strand, within ABIE51_RS15420 at 3346.239 kb on - strand, within ABIE51_RS15420 at 3346.339 kb on + strand, within ABIE51_RS15420
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 3,343,691 + ABIE51_RS15400 0.69 -1.1 3,343,691 + ABIE51_RS15400 0.69 +2.3 3,343,691 + ABIE51_RS15400 0.69 -1.0 3,343,805 + +0.1 3,343,806 - +0.6 3,343,806 - +0.4 3,343,895 - ABIE51_RS15405 0.14 -1.1 3,343,895 - ABIE51_RS15405 0.14 +0.6 3,344,061 - ABIE51_RS15405 0.33 +0.2 3,344,061 - ABIE51_RS15405 0.33 -0.1 3,344,128 + ABIE51_RS15405 0.41 -0.1 3,344,142 - ABIE51_RS15405 0.43 +1.3 3,344,142 - ABIE51_RS15405 0.43 +0.6 3,344,209 + ABIE51_RS15405 0.51 -0.5 3,344,209 + ABIE51_RS15405 0.51 -0.4 3,344,209 + ABIE51_RS15405 0.51 -0.1 3,344,210 - ABIE51_RS15405 0.51 +2.7 3,344,210 - ABIE51_RS15405 0.51 +1.3 3,344,659 + -0.5 3,344,659 + -0.1 3,344,979 - ABIE51_RS15410 0.40 +0.8 3,345,574 + -0.3 3,345,574 + -0.0 3,345,575 - -0.4 3,345,730 - ABIE51_RS15415 0.51 -1.0 3,345,730 - ABIE51_RS15415 0.51 -0.4 3,345,990 + -0.5 3,345,990 + -1.0 3,345,991 - -0.8 3,345,991 - -1.6 3,346,238 + ABIE51_RS15420 0.41 +0.1 3,346,238 + ABIE51_RS15420 0.41 -0.1 3,346,239 - ABIE51_RS15420 0.42 -0.1 3,346,239 - ABIE51_RS15420 0.42 +1.4 3,346,339 + ABIE51_RS15420 0.62 -0.1
Or see this region's nucleotide sequence