Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS11090

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS11080 and ABIE51_RS11085 overlap by 4 nucleotidesABIE51_RS11085 and ABIE51_RS11090 are separated by 153 nucleotidesABIE51_RS11090 and ABIE51_RS11095 are separated by 71 nucleotides ABIE51_RS11080: ABIE51_RS11080 - LysR family transcriptional regulator, at 2,405,866 to 2,406,909 _RS11080 ABIE51_RS11085: ABIE51_RS11085 - sigma factor-like helix-turn-helix DNA-binding protein, at 2,406,906 to 2,407,172 _RS11085 ABIE51_RS11090: ABIE51_RS11090 - cupin domain-containing protein, at 2,407,326 to 2,407,736 _RS11090 ABIE51_RS11095: ABIE51_RS11095 - RNA polymerase sigma-70 factor, at 2,407,808 to 2,408,704 _RS11095 Position (kb) 2407 2408Strain fitness (log2 ratio) -1 0 1at 2406.807 kb on - strandat 2407.292 kb on - strandat 2407.542 kb on + strand, within ABIE51_RS11090at 2407.543 kb on - strand, within ABIE51_RS11090at 2407.543 kb on - strand, within ABIE51_RS11090at 2408.037 kb on - strand, within ABIE51_RS11095at 2408.037 kb on - strand, within ABIE51_RS11095at 2408.199 kb on + strand, within ABIE51_RS11095at 2408.495 kb on + strand, within ABIE51_RS11095at 2408.574 kb on - strand, within ABIE51_RS11095at 2408.577 kb on + strand, within ABIE51_RS11095at 2408.577 kb on + strand, within ABIE51_RS11095at 2408.577 kb on + strand, within ABIE51_RS11095at 2408.578 kb on - strand, within ABIE51_RS11095at 2408.578 kb on - strand, within ABIE51_RS11095at 2408.578 kb on - strand, within ABIE51_RS11095at 2408.689 kb on - strandat 2408.702 kb on + strandat 2408.703 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,406,807 - +0.3
2,407,292 - +0.1
2,407,542 + ABIE51_RS11090 0.53 +0.7
2,407,543 - ABIE51_RS11090 0.53 -0.4
2,407,543 - ABIE51_RS11090 0.53 +1.0
2,408,037 - ABIE51_RS11095 0.26 -0.3
2,408,037 - ABIE51_RS11095 0.26 -0.6
2,408,199 + ABIE51_RS11095 0.44 +0.4
2,408,495 + ABIE51_RS11095 0.77 -0.9
2,408,574 - ABIE51_RS11095 0.85 +0.9
2,408,577 + ABIE51_RS11095 0.86 -1.6
2,408,577 + ABIE51_RS11095 0.86 +0.1
2,408,577 + ABIE51_RS11095 0.86 +0.2
2,408,578 - ABIE51_RS11095 0.86 -0.7
2,408,578 - ABIE51_RS11095 0.86 +1.2
2,408,578 - ABIE51_RS11095 0.86 -0.1
2,408,689 - -0.1
2,408,702 + -1.7
2,408,703 - -0.2

Or see this region's nucleotide sequence