Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS11080 and ABIE51_RS11085 overlap by 4 nucleotides ABIE51_RS11085 and ABIE51_RS11090 are separated by 153 nucleotides ABIE51_RS11090 and ABIE51_RS11095 are separated by 71 nucleotides
ABIE51_RS11080: ABIE51_RS11080 - LysR family transcriptional regulator, at 2,405,866 to 2,406,909
_RS11080
ABIE51_RS11085: ABIE51_RS11085 - sigma factor-like helix-turn-helix DNA-binding protein, at 2,406,906 to 2,407,172
_RS11085
ABIE51_RS11090: ABIE51_RS11090 - cupin domain-containing protein, at 2,407,326 to 2,407,736
_RS11090
ABIE51_RS11095: ABIE51_RS11095 - RNA polymerase sigma-70 factor, at 2,407,808 to 2,408,704
_RS11095
Position (kb)
2407
2408 Strain fitness (log2 ratio)
-1
0
1 at 2406.807 kb on - strand at 2407.292 kb on - strand at 2407.542 kb on + strand, within ABIE51_RS11090 at 2407.543 kb on - strand, within ABIE51_RS11090 at 2407.543 kb on - strand, within ABIE51_RS11090 at 2408.037 kb on - strand, within ABIE51_RS11095 at 2408.037 kb on - strand, within ABIE51_RS11095 at 2408.199 kb on + strand, within ABIE51_RS11095 at 2408.495 kb on + strand, within ABIE51_RS11095 at 2408.574 kb on - strand, within ABIE51_RS11095 at 2408.577 kb on + strand, within ABIE51_RS11095 at 2408.577 kb on + strand, within ABIE51_RS11095 at 2408.577 kb on + strand, within ABIE51_RS11095 at 2408.578 kb on - strand, within ABIE51_RS11095 at 2408.578 kb on - strand, within ABIE51_RS11095 at 2408.578 kb on - strand, within ABIE51_RS11095 at 2408.689 kb on - strand at 2408.702 kb on + strand at 2408.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 2,406,807 - +0.3 2,407,292 - +0.1 2,407,542 + ABIE51_RS11090 0.53 +0.7 2,407,543 - ABIE51_RS11090 0.53 -0.4 2,407,543 - ABIE51_RS11090 0.53 +1.0 2,408,037 - ABIE51_RS11095 0.26 -0.3 2,408,037 - ABIE51_RS11095 0.26 -0.6 2,408,199 + ABIE51_RS11095 0.44 +0.4 2,408,495 + ABIE51_RS11095 0.77 -0.9 2,408,574 - ABIE51_RS11095 0.85 +0.9 2,408,577 + ABIE51_RS11095 0.86 -1.6 2,408,577 + ABIE51_RS11095 0.86 +0.1 2,408,577 + ABIE51_RS11095 0.86 +0.2 2,408,578 - ABIE51_RS11095 0.86 -0.7 2,408,578 - ABIE51_RS11095 0.86 +1.2 2,408,578 - ABIE51_RS11095 0.86 -0.1 2,408,689 - -0.1 2,408,702 + -1.7 2,408,703 - -0.2
Or see this region's nucleotide sequence