Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08920

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08915 and ABIE51_RS08920 are separated by 105 nucleotidesABIE51_RS08920 and ABIE51_RS08925 are separated by 60 nucleotides ABIE51_RS08915: ABIE51_RS08915 - DNA gyrase subunit A, at 1,901,677 to 1,904,361 _RS08915 ABIE51_RS08920: ABIE51_RS08920 - MOSC N-terminal beta barrel domain-containing protein, at 1,904,467 to 1,905,261 _RS08920 ABIE51_RS08925: ABIE51_RS08925 - glycosyltransferase family 9 protein, at 1,905,322 to 1,906,317 _RS08925 Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1904.372 kb on + strandat 1904.646 kb on + strand, within ABIE51_RS08920at 1904.646 kb on + strand, within ABIE51_RS08920at 1904.903 kb on + strand, within ABIE51_RS08920at 1904.903 kb on + strand, within ABIE51_RS08920at 1904.903 kb on + strand, within ABIE51_RS08920at 1904.903 kb on + strand, within ABIE51_RS08920at 1904.903 kb on + strand, within ABIE51_RS08920at 1904.903 kb on + strand, within ABIE51_RS08920at 1904.904 kb on - strand, within ABIE51_RS08920at 1904.904 kb on - strand, within ABIE51_RS08920at 1904.904 kb on - strand, within ABIE51_RS08920at 1904.904 kb on - strand, within ABIE51_RS08920at 1904.904 kb on - strand, within ABIE51_RS08920at 1904.904 kb on - strand, within ABIE51_RS08920at 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.243 kb on - strandat 1905.243 kb on - strandat 1905.243 kb on - strandat 1905.243 kb on - strandat 1905.746 kb on + strand, within ABIE51_RS08925at 1905.746 kb on + strand, within ABIE51_RS08925at 1905.747 kb on - strand, within ABIE51_RS08925at 1905.747 kb on - strand, within ABIE51_RS08925at 1905.747 kb on - strand, within ABIE51_RS08925at 1905.863 kb on + strand, within ABIE51_RS08925at 1905.863 kb on + strand, within ABIE51_RS08925at 1905.863 kb on + strand, within ABIE51_RS08925at 1905.864 kb on - strand, within ABIE51_RS08925at 1905.864 kb on - strand, within ABIE51_RS08925at 1905.864 kb on - strand, within ABIE51_RS08925at 1905.864 kb on - strand, within ABIE51_RS08925at 1905.944 kb on + strand, within ABIE51_RS08925at 1905.945 kb on - strand, within ABIE51_RS08925at 1905.977 kb on + strand, within ABIE51_RS08925at 1905.978 kb on - strand, within ABIE51_RS08925at 1905.978 kb on - strand, within ABIE51_RS08925at 1905.978 kb on - strand, within ABIE51_RS08925at 1905.978 kb on - strand, within ABIE51_RS08925at 1906.106 kb on + strand, within ABIE51_RS08925

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,904,372 + -1.2
1,904,646 + ABIE51_RS08920 0.23 -0.8
1,904,646 + ABIE51_RS08920 0.23 -0.5
1,904,903 + ABIE51_RS08920 0.55 -0.4
1,904,903 + ABIE51_RS08920 0.55 -0.0
1,904,903 + ABIE51_RS08920 0.55 -0.6
1,904,903 + ABIE51_RS08920 0.55 -0.1
1,904,903 + ABIE51_RS08920 0.55 -2.4
1,904,903 + ABIE51_RS08920 0.55 -0.2
1,904,904 - ABIE51_RS08920 0.55 +0.6
1,904,904 - ABIE51_RS08920 0.55 +0.1
1,904,904 - ABIE51_RS08920 0.55 +1.4
1,904,904 - ABIE51_RS08920 0.55 +1.0
1,904,904 - ABIE51_RS08920 0.55 +0.7
1,904,904 - ABIE51_RS08920 0.55 +0.2
1,905,242 + -0.2
1,905,242 + -1.9
1,905,242 + -1.0
1,905,242 + -0.2
1,905,242 + +0.0
1,905,243 - +1.1
1,905,243 - +1.0
1,905,243 - -0.2
1,905,243 - -1.4
1,905,746 + ABIE51_RS08925 0.43 +0.0
1,905,746 + ABIE51_RS08925 0.43 +0.4
1,905,747 - ABIE51_RS08925 0.43 +0.3
1,905,747 - ABIE51_RS08925 0.43 -0.4
1,905,747 - ABIE51_RS08925 0.43 +0.4
1,905,863 + ABIE51_RS08925 0.54 +0.3
1,905,863 + ABIE51_RS08925 0.54 +0.7
1,905,863 + ABIE51_RS08925 0.54 +0.8
1,905,864 - ABIE51_RS08925 0.54 -0.3
1,905,864 - ABIE51_RS08925 0.54 -0.2
1,905,864 - ABIE51_RS08925 0.54 +0.4
1,905,864 - ABIE51_RS08925 0.54 +0.0
1,905,944 + ABIE51_RS08925 0.62 -2.7
1,905,945 - ABIE51_RS08925 0.63 +1.6
1,905,977 + ABIE51_RS08925 0.66 -0.0
1,905,978 - ABIE51_RS08925 0.66 +2.8
1,905,978 - ABIE51_RS08925 0.66 +0.2
1,905,978 - ABIE51_RS08925 0.66 +0.5
1,905,978 - ABIE51_RS08925 0.66 +0.1
1,906,106 + ABIE51_RS08925 0.79 +1.5

Or see this region's nucleotide sequence