Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS07935

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS07930 and ABIE51_RS07935 are separated by 51 nucleotidesABIE51_RS07935 and ABIE51_RS07940 overlap by 4 nucleotidesABIE51_RS07940 and ABIE51_RS07945 are separated by 131 nucleotides ABIE51_RS07930: ABIE51_RS07930 - outer membrane beta-barrel protein, at 1,689,674 to 1,691,038 _RS07930 ABIE51_RS07935: ABIE51_RS07935 - CpsD/CapB family tyrosine-protein kinase, at 1,691,090 to 1,691,857 _RS07935 ABIE51_RS07940: ABIE51_RS07940 - hypothetical protein, at 1,691,854 to 1,692,378 _RS07940 ABIE51_RS07945: ABIE51_RS07945 - hypothetical protein, at 1,692,510 to 1,693,463 _RS07945 Position (kb) 1691 1692Strain fitness (log2 ratio) -1 0 1at 1690.179 kb on + strand, within ABIE51_RS07930at 1690.182 kb on + strand, within ABIE51_RS07930at 1690.183 kb on - strand, within ABIE51_RS07930at 1690.266 kb on + strand, within ABIE51_RS07930at 1690.267 kb on - strand, within ABIE51_RS07930at 1690.344 kb on + strand, within ABIE51_RS07930at 1690.344 kb on + strand, within ABIE51_RS07930at 1690.764 kb on + strand, within ABIE51_RS07930at 1690.920 kb on + strandat 1690.921 kb on - strandat 1691.271 kb on + strand, within ABIE51_RS07935at 1691.272 kb on - strand, within ABIE51_RS07935at 1691.335 kb on - strand, within ABIE51_RS07935at 1691.439 kb on + strand, within ABIE51_RS07935at 1691.894 kb on + strandat 1692.746 kb on - strand, within ABIE51_RS07945at 1692.851 kb on - strand, within ABIE51_RS07945

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,690,179 + ABIE51_RS07930 0.37 -0.8
1,690,182 + ABIE51_RS07930 0.37 +0.6
1,690,183 - ABIE51_RS07930 0.37 -0.5
1,690,266 + ABIE51_RS07930 0.43 +0.7
1,690,267 - ABIE51_RS07930 0.43 -0.2
1,690,344 + ABIE51_RS07930 0.49 +0.3
1,690,344 + ABIE51_RS07930 0.49 +0.4
1,690,764 + ABIE51_RS07930 0.80 +0.0
1,690,920 + +0.2
1,690,921 - +0.9
1,691,271 + ABIE51_RS07935 0.24 +0.3
1,691,272 - ABIE51_RS07935 0.24 +0.9
1,691,335 - ABIE51_RS07935 0.32 +0.6
1,691,439 + ABIE51_RS07935 0.45 +0.0
1,691,894 + -0.3
1,692,746 - ABIE51_RS07945 0.25 +1.2
1,692,851 - ABIE51_RS07945 0.36 +0.0

Or see this region's nucleotide sequence