Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06820

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06815 and ABIE51_RS06820 overlap by 8 nucleotidesABIE51_RS06820 and ABIE51_RS06825 are separated by 31 nucleotides ABIE51_RS06815: ABIE51_RS06815 - (2E,6E)-farnesyl diphosphate synthase, at 1,461,976 to 1,462,851 _RS06815 ABIE51_RS06820: ABIE51_RS06820 - exodeoxyribonuclease VII small subunit, at 1,462,844 to 1,463,134 _RS06820 ABIE51_RS06825: ABIE51_RS06825 - tRNA lysidine(34) synthetase TilS, at 1,463,166 to 1,464,485 _RS06825 Position (kb) 1462 1463 1464Strain fitness (log2 ratio) -2 -1 0 1 2at 1462.204 kb on + strand, within ABIE51_RS06815at 1462.236 kb on - strand, within ABIE51_RS06815at 1462.510 kb on + strand, within ABIE51_RS06815at 1462.511 kb on - strand, within ABIE51_RS06815at 1462.511 kb on - strand, within ABIE51_RS06815at 1462.511 kb on - strand, within ABIE51_RS06815at 1462.625 kb on + strand, within ABIE51_RS06815at 1462.626 kb on - strand, within ABIE51_RS06815at 1462.626 kb on - strand, within ABIE51_RS06815at 1462.703 kb on + strand, within ABIE51_RS06815at 1462.703 kb on + strand, within ABIE51_RS06815at 1462.704 kb on - strand, within ABIE51_RS06815at 1462.704 kb on - strand, within ABIE51_RS06815at 1462.741 kb on + strand, within ABIE51_RS06815at 1462.742 kb on - strand, within ABIE51_RS06815at 1462.974 kb on + strand, within ABIE51_RS06820at 1462.995 kb on + strand, within ABIE51_RS06820at 1462.996 kb on - strand, within ABIE51_RS06820at 1462.996 kb on - strand, within ABIE51_RS06820at 1462.996 kb on - strand, within ABIE51_RS06820at 1463.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,462,204 + ABIE51_RS06815 0.26 +1.8
1,462,236 - ABIE51_RS06815 0.30 +0.5
1,462,510 + ABIE51_RS06815 0.61 -2.2
1,462,511 - ABIE51_RS06815 0.61 +0.0
1,462,511 - ABIE51_RS06815 0.61 -0.1
1,462,511 - ABIE51_RS06815 0.61 -0.9
1,462,625 + ABIE51_RS06815 0.74 +0.4
1,462,626 - ABIE51_RS06815 0.74 -0.0
1,462,626 - ABIE51_RS06815 0.74 +0.1
1,462,703 + ABIE51_RS06815 0.83 -0.4
1,462,703 + ABIE51_RS06815 0.83 -1.4
1,462,704 - ABIE51_RS06815 0.83 -0.2
1,462,704 - ABIE51_RS06815 0.83 -0.6
1,462,741 + ABIE51_RS06815 0.87 -0.4
1,462,742 - ABIE51_RS06815 0.87 -2.3
1,462,974 + ABIE51_RS06820 0.45 -0.6
1,462,995 + ABIE51_RS06820 0.52 +0.5
1,462,996 - ABIE51_RS06820 0.52 -1.2
1,462,996 - ABIE51_RS06820 0.52 +0.8
1,462,996 - ABIE51_RS06820 0.52 +0.0
1,463,126 - -0.5

Or see this region's nucleotide sequence