Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03395 and ABIE51_RS03400 are separated by 95 nucleotides ABIE51_RS03400 and ABIE51_RS03405 are separated by 257 nucleotides ABIE51_RS03405 and ABIE51_RS03410 are separated by 947 nucleotides
ABIE51_RS03395: ABIE51_RS03395 - zinc-dependent alcohol dehydrogenase family protein, at 751,113 to 752,117
_RS03395
ABIE51_RS03400: ABIE51_RS03400 - DsrE family protein, at 752,213 to 752,647
_RS03400
ABIE51_RS03405: ABIE51_RS03405 - SDR family NAD(P)-dependent oxidoreductase, at 752,905 to 753,822
_RS03405
ABIE51_RS03410: ABIE51_RS03410 - PAS domain-containing protein, at 754,770 to 757,499
_RS03410
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 751.905 kb on + strand, within ABIE51_RS03395 at 751.905 kb on + strand, within ABIE51_RS03395 at 751.920 kb on - strand, within ABIE51_RS03395 at 751.920 kb on - strand, within ABIE51_RS03395 at 752.061 kb on + strand at 752.061 kb on + strand at 752.061 kb on + strand at 752.061 kb on + strand at 752.061 kb on + strand at 752.061 kb on + strand at 752.062 kb on - strand at 752.062 kb on - strand at 752.062 kb on - strand at 752.068 kb on - strand at 752.085 kb on - strand at 752.163 kb on + strand at 752.163 kb on + strand at 752.163 kb on + strand at 752.163 kb on + strand at 752.164 kb on - strand at 752.164 kb on - strand at 752.164 kb on - strand at 752.164 kb on - strand at 752.165 kb on + strand at 752.165 kb on + strand at 752.166 kb on - strand at 752.166 kb on - strand at 752.166 kb on - strand at 752.166 kb on - strand at 752.166 kb on - strand at 752.172 kb on - strand at 752.172 kb on - strand at 752.278 kb on + strand, within ABIE51_RS03400 at 752.278 kb on + strand, within ABIE51_RS03400 at 752.289 kb on - strand, within ABIE51_RS03400 at 752.289 kb on - strand, within ABIE51_RS03400 at 752.300 kb on + strand, within ABIE51_RS03400 at 752.301 kb on - strand, within ABIE51_RS03400 at 752.358 kb on - strand, within ABIE51_RS03400 at 752.392 kb on + strand, within ABIE51_RS03400 at 752.392 kb on + strand, within ABIE51_RS03400 at 752.392 kb on + strand, within ABIE51_RS03400 at 752.392 kb on + strand, within ABIE51_RS03400 at 752.392 kb on + strand, within ABIE51_RS03400 at 752.393 kb on - strand, within ABIE51_RS03400 at 752.393 kb on - strand, within ABIE51_RS03400 at 752.393 kb on - strand, within ABIE51_RS03400 at 752.394 kb on + strand, within ABIE51_RS03400 at 752.394 kb on + strand, within ABIE51_RS03400 at 752.394 kb on + strand, within ABIE51_RS03400 at 752.395 kb on - strand, within ABIE51_RS03400 at 752.526 kb on - strand, within ABIE51_RS03400 at 752.835 kb on + strand at 752.835 kb on + strand at 752.835 kb on + strand at 752.835 kb on + strand at 752.835 kb on + strand at 752.835 kb on + strand at 752.836 kb on - strand at 752.836 kb on - strand at 752.836 kb on - strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.890 kb on - strand at 752.890 kb on - strand at 752.890 kb on - strand at 752.890 kb on - strand at 752.890 kb on - strand at 752.960 kb on + strand at 752.960 kb on + strand at 752.961 kb on - strand at 752.964 kb on + strand at 752.965 kb on - strand at 752.965 kb on - strand at 752.965 kb on - strand at 752.965 kb on - strand at 752.974 kb on - strand at 753.015 kb on - strand, within ABIE51_RS03405 at 753.105 kb on - strand, within ABIE51_RS03405 at 753.292 kb on + strand, within ABIE51_RS03405 at 753.292 kb on + strand, within ABIE51_RS03405 at 753.292 kb on + strand, within ABIE51_RS03405 at 753.292 kb on + strand, within ABIE51_RS03405 at 753.292 kb on + strand, within ABIE51_RS03405 at 753.292 kb on + strand, within ABIE51_RS03405 at 753.292 kb on + strand, within ABIE51_RS03405 at 753.293 kb on - strand, within ABIE51_RS03405 at 753.293 kb on - strand, within ABIE51_RS03405 at 753.293 kb on - strand, within ABIE51_RS03405 at 753.293 kb on - strand, within ABIE51_RS03405 at 753.312 kb on - strand, within ABIE51_RS03405 at 753.451 kb on + strand, within ABIE51_RS03405 at 753.451 kb on + strand, within ABIE51_RS03405 at 753.452 kb on - strand, within ABIE51_RS03405 at 753.452 kb on - strand, within ABIE51_RS03405 at 753.452 kb on - strand, within ABIE51_RS03405 at 753.452 kb on - strand, within ABIE51_RS03405 at 753.452 kb on - strand, within ABIE51_RS03405 at 753.587 kb on + strand, within ABIE51_RS03405 at 753.587 kb on + strand, within ABIE51_RS03405 at 753.587 kb on + strand, within ABIE51_RS03405 at 753.588 kb on - strand, within ABIE51_RS03405 at 753.588 kb on - strand, within ABIE51_RS03405 at 753.588 kb on - strand, within ABIE51_RS03405 at 753.633 kb on + strand, within ABIE51_RS03405 at 753.648 kb on - strand, within ABIE51_RS03405 at 753.686 kb on - strand, within ABIE51_RS03405 at 753.686 kb on - strand, within ABIE51_RS03405 at 753.699 kb on + strand, within ABIE51_RS03405 at 753.699 kb on + strand, within ABIE51_RS03405 at 753.699 kb on + strand, within ABIE51_RS03405 at 753.699 kb on + strand, within ABIE51_RS03405 at 753.700 kb on - strand, within ABIE51_RS03405 at 753.700 kb on - strand, within ABIE51_RS03405 at 753.754 kb on + strand at 753.863 kb on + strand at 753.970 kb on + strand at 753.970 kb on + strand at 753.970 kb on + strand at 753.970 kb on + strand at 753.971 kb on - strand at 753.971 kb on - strand at 753.971 kb on - strand at 753.971 kb on - strand at 753.981 kb on - strand at 753.981 kb on - strand at 753.990 kb on - strand at 754.014 kb on + strand at 754.048 kb on + strand at 754.048 kb on + strand at 754.048 kb on + strand at 754.049 kb on - strand at 754.049 kb on - strand at 754.049 kb on - strand at 754.049 kb on - strand at 754.282 kb on + strand at 754.291 kb on + strand at 754.291 kb on + strand at 754.358 kb on + strand at 754.358 kb on + strand at 754.358 kb on + strand at 754.358 kb on + strand at 754.359 kb on - strand at 754.359 kb on - strand at 754.359 kb on - strand at 754.359 kb on - strand at 754.359 kb on - strand at 754.359 kb on - strand at 754.359 kb on - strand at 754.403 kb on + strand at 754.403 kb on + strand at 754.403 kb on + strand at 754.403 kb on + strand at 754.404 kb on - strand at 754.404 kb on - strand at 754.404 kb on - strand at 754.404 kb on - strand at 754.404 kb on - strand at 754.414 kb on + strand at 754.414 kb on + strand at 754.414 kb on + strand at 754.415 kb on - strand at 754.415 kb on - strand at 754.415 kb on - strand at 754.415 kb on - strand at 754.415 kb on - strand at 754.415 kb on - strand at 754.415 kb on - strand at 754.448 kb on + strand at 754.448 kb on + strand at 754.448 kb on + strand at 754.449 kb on - strand at 754.449 kb on - strand at 754.449 kb on - strand at 754.449 kb on - strand at 754.449 kb on - strand at 754.449 kb on - strand at 754.449 kb on - strand at 754.474 kb on + strand at 754.474 kb on + strand at 754.474 kb on + strand at 754.474 kb on + strand at 754.474 kb on + strand at 754.474 kb on + strand at 754.474 kb on + strand at 754.474 kb on + strand at 754.475 kb on - strand at 754.475 kb on - strand at 754.475 kb on - strand at 754.475 kb on - strand at 754.475 kb on - strand at 754.475 kb on - strand at 754.475 kb on - strand at 754.475 kb on - strand at 754.475 kb on - strand at 754.543 kb on + strand at 754.543 kb on + strand at 754.543 kb on + strand at 754.544 kb on - strand at 754.544 kb on - strand at 754.544 kb on - strand at 754.544 kb on - strand at 754.544 kb on - strand at 754.552 kb on + strand at 754.552 kb on + strand at 754.552 kb on + strand at 754.553 kb on - strand at 754.553 kb on - strand at 754.553 kb on - strand at 754.564 kb on + strand at 754.580 kb on + strand at 754.580 kb on + strand at 754.580 kb on + strand at 754.580 kb on + strand at 754.580 kb on + strand at 754.580 kb on + strand at 754.581 kb on - strand at 754.581 kb on - strand at 754.581 kb on - strand at 754.581 kb on - strand at 754.581 kb on - strand at 754.618 kb on - strand at 754.653 kb on + strand at 754.653 kb on + strand at 754.653 kb on + strand at 754.653 kb on + strand at 754.654 kb on - strand at 754.654 kb on - strand at 754.654 kb on - strand at 754.654 kb on - strand at 754.654 kb on - strand at 754.683 kb on - strand at 754.698 kb on + strand at 754.698 kb on + strand at 754.699 kb on - strand at 754.734 kb on + strand at 754.734 kb on + strand at 754.734 kb on + strand at 754.735 kb on - strand at 754.735 kb on - strand at 754.735 kb on - strand at 754.735 kb on - strand at 754.769 kb on + strand at 754.769 kb on + strand at 754.769 kb on + strand at 754.769 kb on + strand at 754.769 kb on + strand at 754.769 kb on + strand at 754.769 kb on + strand at 754.769 kb on + strand at 754.769 kb on + strand at 754.770 kb on - strand at 754.770 kb on - strand at 754.770 kb on - strand at 754.770 kb on - strand at 754.770 kb on - strand at 754.770 kb on - strand at 754.770 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 751,905 + ABIE51_RS03395 0.79 -1.1 751,905 + ABIE51_RS03395 0.79 +0.5 751,920 - ABIE51_RS03395 0.80 -0.2 751,920 - ABIE51_RS03395 0.80 -2.6 752,061 + +0.7 752,061 + +0.2 752,061 + +0.5 752,061 + -0.0 752,061 + -1.9 752,061 + +0.2 752,062 - +0.6 752,062 - -1.5 752,062 - -0.3 752,068 - +0.7 752,085 - -1.9 752,163 + -0.7 752,163 + +0.6 752,163 + -0.0 752,163 + +0.3 752,164 - +0.4 752,164 - +0.7 752,164 - +0.1 752,164 - -0.4 752,165 + -0.6 752,165 + +0.9 752,166 - +0.8 752,166 - +0.1 752,166 - +0.3 752,166 - -0.4 752,166 - +0.7 752,172 - -0.9 752,172 - +1.0 752,278 + ABIE51_RS03400 0.15 +1.7 752,278 + ABIE51_RS03400 0.15 +0.3 752,289 - ABIE51_RS03400 0.17 +0.1 752,289 - ABIE51_RS03400 0.17 -0.2 752,300 + ABIE51_RS03400 0.20 +2.4 752,301 - ABIE51_RS03400 0.20 +0.3 752,358 - ABIE51_RS03400 0.33 -0.7 752,392 + ABIE51_RS03400 0.41 +0.2 752,392 + ABIE51_RS03400 0.41 +0.1 752,392 + ABIE51_RS03400 0.41 -0.2 752,392 + ABIE51_RS03400 0.41 -1.0 752,392 + ABIE51_RS03400 0.41 +0.9 752,393 - ABIE51_RS03400 0.41 -0.5 752,393 - ABIE51_RS03400 0.41 -1.9 752,393 - ABIE51_RS03400 0.41 +0.2 752,394 + ABIE51_RS03400 0.42 -0.2 752,394 + ABIE51_RS03400 0.42 -0.0 752,394 + ABIE51_RS03400 0.42 +0.1 752,395 - ABIE51_RS03400 0.42 +0.0 752,526 - ABIE51_RS03400 0.72 +1.6 752,835 + +0.0 752,835 + +1.4 752,835 + -0.4 752,835 + -0.0 752,835 + -0.1 752,835 + +0.6 752,836 - +0.2 752,836 - +0.6 752,836 - -0.2 752,889 + -0.6 752,889 + +0.8 752,889 + +0.6 752,889 + +0.5 752,889 + -0.0 752,889 + -1.0 752,889 + -0.5 752,890 - -1.0 752,890 - +0.4 752,890 - +2.1 752,890 - +0.2 752,890 - -0.3 752,960 + -0.3 752,960 + -0.6 752,961 - -0.5 752,964 + -2.4 752,965 - +0.2 752,965 - +0.3 752,965 - +0.4 752,965 - +1.1 752,974 - +0.2 753,015 - ABIE51_RS03405 0.12 -0.6 753,105 - ABIE51_RS03405 0.22 -0.4 753,292 + ABIE51_RS03405 0.42 +0.2 753,292 + ABIE51_RS03405 0.42 +0.4 753,292 + ABIE51_RS03405 0.42 -0.0 753,292 + ABIE51_RS03405 0.42 +0.1 753,292 + ABIE51_RS03405 0.42 -0.0 753,292 + ABIE51_RS03405 0.42 -0.7 753,292 + ABIE51_RS03405 0.42 +1.3 753,293 - ABIE51_RS03405 0.42 +1.0 753,293 - ABIE51_RS03405 0.42 -0.6 753,293 - ABIE51_RS03405 0.42 +0.4 753,293 - ABIE51_RS03405 0.42 +0.5 753,312 - ABIE51_RS03405 0.44 -0.4 753,451 + ABIE51_RS03405 0.59 -0.9 753,451 + ABIE51_RS03405 0.59 +1.8 753,452 - ABIE51_RS03405 0.60 -0.3 753,452 - ABIE51_RS03405 0.60 +0.4 753,452 - ABIE51_RS03405 0.60 +0.0 753,452 - ABIE51_RS03405 0.60 +0.9 753,452 - ABIE51_RS03405 0.60 +0.6 753,587 + ABIE51_RS03405 0.74 -0.5 753,587 + ABIE51_RS03405 0.74 +0.0 753,587 + ABIE51_RS03405 0.74 -0.0 753,588 - ABIE51_RS03405 0.74 +0.7 753,588 - ABIE51_RS03405 0.74 +0.5 753,588 - ABIE51_RS03405 0.74 -0.9 753,633 + ABIE51_RS03405 0.79 -0.0 753,648 - ABIE51_RS03405 0.81 -0.3 753,686 - ABIE51_RS03405 0.85 +0.3 753,686 - ABIE51_RS03405 0.85 -2.9 753,699 + ABIE51_RS03405 0.86 -2.9 753,699 + ABIE51_RS03405 0.86 -1.2 753,699 + ABIE51_RS03405 0.86 -1.4 753,699 + ABIE51_RS03405 0.86 -0.5 753,700 - ABIE51_RS03405 0.87 +0.3 753,700 - ABIE51_RS03405 0.87 +0.2 753,754 + +0.2 753,863 + +0.1 753,970 + -0.2 753,970 + +0.8 753,970 + -0.6 753,970 + +0.8 753,971 - -0.3 753,971 - -0.9 753,971 - +0.8 753,971 - +0.4 753,981 - -0.1 753,981 - -0.5 753,990 - +0.2 754,014 + +0.1 754,048 + -3.5 754,048 + -0.5 754,048 + -0.0 754,049 - +0.3 754,049 - -0.1 754,049 - -0.4 754,049 - +0.1 754,282 + -0.2 754,291 + -0.1 754,291 + -0.1 754,358 + -0.5 754,358 + -0.4 754,358 + +0.0 754,358 + -0.7 754,359 - +0.0 754,359 - -1.7 754,359 - -0.7 754,359 - +0.6 754,359 - +0.9 754,359 - -0.6 754,359 - +0.1 754,403 + +0.7 754,403 + +0.1 754,403 + -0.1 754,403 + -0.7 754,404 - -1.2 754,404 - +0.8 754,404 - -0.5 754,404 - -0.4 754,404 - +0.4 754,414 + -2.9 754,414 + +0.6 754,414 + +0.6 754,415 - +0.3 754,415 - -0.9 754,415 - +0.2 754,415 - +1.1 754,415 - +0.5 754,415 - +0.3 754,415 - +0.1 754,448 + +0.5 754,448 + -0.8 754,448 + +0.8 754,449 - +0.6 754,449 - +0.4 754,449 - +0.0 754,449 - -2.8 754,449 - -0.0 754,449 - -1.5 754,449 - +0.2 754,474 + -1.8 754,474 + -0.7 754,474 + -0.5 754,474 + -1.1 754,474 + -0.3 754,474 + +2.4 754,474 + +0.6 754,474 + +0.3 754,475 - +1.0 754,475 - -0.2 754,475 - +0.3 754,475 - -1.4 754,475 - -0.2 754,475 - -0.1 754,475 - -0.2 754,475 - +1.5 754,475 - +0.7 754,543 + +0.2 754,543 + -0.3 754,543 + +1.1 754,544 - +0.5 754,544 - +0.4 754,544 - +1.1 754,544 - +0.2 754,544 - -0.0 754,552 + +0.4 754,552 + +0.3 754,552 + +1.1 754,553 - +0.2 754,553 - +0.5 754,553 - +0.4 754,564 + +0.1 754,580 + +1.5 754,580 + +0.6 754,580 + -1.5 754,580 + -0.4 754,580 + -0.3 754,580 + +1.0 754,581 - +0.4 754,581 - +0.4 754,581 - +0.2 754,581 - -0.1 754,581 - +1.5 754,618 - +0.1 754,653 + +0.2 754,653 + -0.6 754,653 + -0.1 754,653 + -0.2 754,654 - +0.4 754,654 - -0.2 754,654 - -0.9 754,654 - +2.1 754,654 - -0.2 754,683 - -0.2 754,698 + -0.2 754,698 + -1.5 754,699 - +2.1 754,734 + +1.0 754,734 + +0.7 754,734 + -0.9 754,735 - -1.1 754,735 - +0.4 754,735 - -1.1 754,735 - -0.2 754,769 + +1.1 754,769 + -0.3 754,769 + +0.4 754,769 + -0.6 754,769 + -0.8 754,769 + -0.3 754,769 + +1.0 754,769 + +0.7 754,769 + -1.5 754,770 - -0.5 754,770 - -1.0 754,770 - +1.4 754,770 - -1.2 754,770 - -1.3 754,770 - -0.2 754,770 - -0.1
Or see this region's nucleotide sequence