Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS03080

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS03070 and ABIE51_RS03075 are separated by 151 nucleotidesABIE51_RS03075 and ABIE51_RS03080 overlap by 4 nucleotidesABIE51_RS03080 and ABIE51_RS03085 are separated by 22 nucleotides ABIE51_RS03070: ABIE51_RS03070 - NAD(+)--rifampin ADP-ribosyltransferase, at 679,854 to 680,255 _RS03070 ABIE51_RS03075: ABIE51_RS03075 - nucleoside deaminase, at 680,407 to 680,862 _RS03075 ABIE51_RS03080: ABIE51_RS03080 - GNAT family N-acetyltransferase, at 680,859 to 681,341 _RS03080 ABIE51_RS03085: ABIE51_RS03085 - HlyD family secretion protein, at 681,364 to 682,470 _RS03085 Position (kb) 680 681 682Strain fitness (log2 ratio) -2 -1 0 1 2 3at 679.988 kb on - strand, within ABIE51_RS03070at 680.068 kb on + strand, within ABIE51_RS03070at 680.068 kb on + strand, within ABIE51_RS03070at 680.068 kb on + strand, within ABIE51_RS03070at 680.068 kb on + strand, within ABIE51_RS03070at 680.068 kb on + strand, within ABIE51_RS03070at 680.068 kb on + strand, within ABIE51_RS03070at 680.068 kb on + strand, within ABIE51_RS03070at 680.068 kb on + strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.069 kb on - strand, within ABIE51_RS03070at 680.140 kb on + strand, within ABIE51_RS03070at 680.140 kb on + strand, within ABIE51_RS03070at 680.170 kb on + strand, within ABIE51_RS03070at 680.170 kb on + strand, within ABIE51_RS03070at 680.171 kb on - strand, within ABIE51_RS03070at 680.233 kb on + strandat 680.233 kb on + strandat 680.233 kb on + strandat 680.234 kb on - strandat 680.234 kb on - strandat 680.234 kb on - strandat 680.234 kb on - strandat 680.236 kb on + strandat 680.236 kb on + strandat 680.236 kb on + strandat 680.236 kb on + strandat 680.236 kb on + strandat 680.236 kb on + strandat 680.236 kb on + strandat 680.236 kb on + strandat 680.236 kb on + strandat 680.236 kb on + strandat 680.236 kb on + strandat 680.236 kb on + strandat 680.237 kb on - strandat 680.237 kb on - strandat 680.237 kb on - strandat 680.237 kb on - strandat 680.237 kb on - strandat 680.246 kb on + strandat 680.339 kb on + strandat 680.339 kb on + strandat 680.339 kb on + strandat 680.339 kb on + strandat 680.339 kb on + strandat 680.340 kb on - strandat 680.340 kb on - strandat 680.340 kb on - strandat 680.340 kb on - strandat 680.340 kb on - strandat 680.341 kb on + strandat 680.341 kb on + strandat 680.341 kb on + strandat 680.342 kb on - strandat 680.342 kb on - strandat 680.343 kb on + strandat 680.343 kb on + strandat 680.343 kb on + strandat 680.344 kb on - strandat 680.344 kb on - strandat 680.456 kb on + strand, within ABIE51_RS03075at 680.456 kb on + strand, within ABIE51_RS03075at 680.456 kb on + strand, within ABIE51_RS03075at 680.456 kb on + strand, within ABIE51_RS03075at 680.457 kb on - strand, within ABIE51_RS03075at 680.607 kb on - strand, within ABIE51_RS03075at 680.607 kb on - strand, within ABIE51_RS03075at 680.762 kb on + strand, within ABIE51_RS03075at 680.762 kb on + strand, within ABIE51_RS03075at 680.763 kb on - strand, within ABIE51_RS03075at 680.763 kb on - strand, within ABIE51_RS03075at 680.917 kb on + strand, within ABIE51_RS03080at 680.917 kb on + strand, within ABIE51_RS03080at 680.917 kb on + strand, within ABIE51_RS03080at 680.917 kb on + strand, within ABIE51_RS03080at 680.917 kb on + strand, within ABIE51_RS03080at 680.917 kb on + strand, within ABIE51_RS03080at 680.917 kb on + strand, within ABIE51_RS03080at 680.918 kb on - strand, within ABIE51_RS03080at 680.918 kb on - strand, within ABIE51_RS03080at 680.918 kb on - strand, within ABIE51_RS03080at 680.918 kb on - strand, within ABIE51_RS03080at 680.918 kb on - strand, within ABIE51_RS03080at 680.921 kb on + strand, within ABIE51_RS03080at 680.922 kb on - strand, within ABIE51_RS03080at 680.922 kb on - strand, within ABIE51_RS03080at 680.930 kb on + strand, within ABIE51_RS03080at 680.930 kb on + strand, within ABIE51_RS03080at 680.931 kb on - strand, within ABIE51_RS03080at 680.931 kb on - strand, within ABIE51_RS03080at 680.953 kb on + strand, within ABIE51_RS03080at 680.953 kb on + strand, within ABIE51_RS03080at 680.953 kb on + strand, within ABIE51_RS03080at 680.953 kb on + strand, within ABIE51_RS03080at 680.953 kb on + strand, within ABIE51_RS03080at 680.954 kb on - strand, within ABIE51_RS03080at 680.954 kb on - strand, within ABIE51_RS03080at 680.954 kb on - strand, within ABIE51_RS03080at 680.954 kb on - strand, within ABIE51_RS03080at 680.954 kb on - strand, within ABIE51_RS03080at 680.956 kb on + strand, within ABIE51_RS03080at 680.956 kb on + strand, within ABIE51_RS03080at 680.956 kb on + strand, within ABIE51_RS03080at 680.957 kb on - strand, within ABIE51_RS03080at 680.957 kb on - strand, within ABIE51_RS03080at 681.109 kb on + strand, within ABIE51_RS03080at 681.109 kb on + strand, within ABIE51_RS03080at 681.109 kb on + strand, within ABIE51_RS03080at 681.109 kb on + strand, within ABIE51_RS03080at 681.110 kb on - strand, within ABIE51_RS03080at 681.110 kb on - strand, within ABIE51_RS03080at 681.110 kb on - strand, within ABIE51_RS03080at 681.110 kb on - strand, within ABIE51_RS03080at 681.110 kb on - strand, within ABIE51_RS03080at 681.110 kb on - strand, within ABIE51_RS03080at 681.139 kb on + strand, within ABIE51_RS03080at 681.139 kb on + strand, within ABIE51_RS03080at 681.140 kb on - strand, within ABIE51_RS03080at 681.140 kb on - strand, within ABIE51_RS03080at 681.140 kb on - strand, within ABIE51_RS03080at 681.220 kb on + strand, within ABIE51_RS03080at 681.274 kb on + strand, within ABIE51_RS03080at 681.275 kb on - strand, within ABIE51_RS03080at 681.309 kb on + strandat 681.309 kb on + strandat 681.309 kb on + strandat 681.309 kb on + strandat 681.309 kb on + strandat 681.310 kb on - strandat 681.310 kb on - strandat 681.310 kb on - strandat 681.310 kb on - strandat 681.310 kb on - strandat 681.722 kb on + strand, within ABIE51_RS03085at 681.722 kb on + strand, within ABIE51_RS03085at 681.722 kb on + strand, within ABIE51_RS03085at 681.723 kb on - strand, within ABIE51_RS03085at 681.723 kb on - strand, within ABIE51_RS03085at 681.723 kb on - strand, within ABIE51_RS03085at 681.723 kb on - strand, within ABIE51_RS03085at 682.247 kb on + strand, within ABIE51_RS03085at 682.248 kb on - strand, within ABIE51_RS03085

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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679,988 - ABIE51_RS03070 0.33 +0.1
680,068 + ABIE51_RS03070 0.53 +0.6
680,068 + ABIE51_RS03070 0.53 +0.3
680,068 + ABIE51_RS03070 0.53 +0.5
680,068 + ABIE51_RS03070 0.53 +1.8
680,068 + ABIE51_RS03070 0.53 +0.5
680,068 + ABIE51_RS03070 0.53 +0.6
680,068 + ABIE51_RS03070 0.53 -1.4
680,068 + ABIE51_RS03070 0.53 -0.3
680,069 - ABIE51_RS03070 0.53 -1.4
680,069 - ABIE51_RS03070 0.53 -0.5
680,069 - ABIE51_RS03070 0.53 +1.2
680,069 - ABIE51_RS03070 0.53 -0.1
680,069 - ABIE51_RS03070 0.53 -1.1
680,069 - ABIE51_RS03070 0.53 +0.3
680,069 - ABIE51_RS03070 0.53 +0.0
680,069 - ABIE51_RS03070 0.53 +0.6
680,069 - ABIE51_RS03070 0.53 +1.2
680,069 - ABIE51_RS03070 0.53 +0.8
680,069 - ABIE51_RS03070 0.53 -0.3
680,069 - ABIE51_RS03070 0.53 +0.5
680,069 - ABIE51_RS03070 0.53 +0.3
680,140 + ABIE51_RS03070 0.71 -0.8
680,140 + ABIE51_RS03070 0.71 -0.8
680,170 + ABIE51_RS03070 0.79 -0.2
680,170 + ABIE51_RS03070 0.79 -1.0
680,171 - ABIE51_RS03070 0.79 +0.1
680,233 + +0.9
680,233 + +0.2
680,233 + -0.9
680,234 - -0.8
680,234 - +0.4
680,234 - -0.6
680,234 - -0.5
680,236 + +0.1
680,236 + +0.5
680,236 + -0.8
680,236 + +0.6
680,236 + -2.2
680,236 + +0.9
680,236 + -1.2
680,236 + -0.5
680,236 + +3.1
680,236 + +0.8
680,236 + +0.4
680,236 + +0.4
680,237 - -0.7
680,237 - +0.3
680,237 - -0.5
680,237 - +0.9
680,237 - -1.5
680,246 + -0.5
680,339 + +0.1
680,339 + -0.3
680,339 + -0.0
680,339 + -0.2
680,339 + -0.8
680,340 - +0.3
680,340 - -0.2
680,340 - -0.4
680,340 - -0.2
680,340 - -0.4
680,341 + +0.2
680,341 + +0.2
680,341 + +0.6
680,342 - -0.1
680,342 - +1.9
680,343 + +0.1
680,343 + -0.1
680,343 + +0.0
680,344 - +0.6
680,344 - -1.1
680,456 + ABIE51_RS03075 0.11 -0.5
680,456 + ABIE51_RS03075 0.11 -1.2
680,456 + ABIE51_RS03075 0.11 -1.0
680,456 + ABIE51_RS03075 0.11 -0.3
680,457 - ABIE51_RS03075 0.11 +0.8
680,607 - ABIE51_RS03075 0.44 -0.8
680,607 - ABIE51_RS03075 0.44 +0.2
680,762 + ABIE51_RS03075 0.78 +1.8
680,762 + ABIE51_RS03075 0.78 +0.0
680,763 - ABIE51_RS03075 0.78 +0.2
680,763 - ABIE51_RS03075 0.78 +0.0
680,917 + ABIE51_RS03080 0.12 -1.0
680,917 + ABIE51_RS03080 0.12 +0.2
680,917 + ABIE51_RS03080 0.12 -0.6
680,917 + ABIE51_RS03080 0.12 -0.5
680,917 + ABIE51_RS03080 0.12 -0.0
680,917 + ABIE51_RS03080 0.12 -0.1
680,917 + ABIE51_RS03080 0.12 +0.1
680,918 - ABIE51_RS03080 0.12 +1.5
680,918 - ABIE51_RS03080 0.12 +1.8
680,918 - ABIE51_RS03080 0.12 -1.2
680,918 - ABIE51_RS03080 0.12 +0.3
680,918 - ABIE51_RS03080 0.12 -0.5
680,921 + ABIE51_RS03080 0.13 -1.0
680,922 - ABIE51_RS03080 0.13 +0.2
680,922 - ABIE51_RS03080 0.13 -0.2
680,930 + ABIE51_RS03080 0.15 +1.1
680,930 + ABIE51_RS03080 0.15 +0.0
680,931 - ABIE51_RS03080 0.15 +0.2
680,931 - ABIE51_RS03080 0.15 -0.9
680,953 + ABIE51_RS03080 0.19 -0.1
680,953 + ABIE51_RS03080 0.19 +0.6
680,953 + ABIE51_RS03080 0.19 -0.8
680,953 + ABIE51_RS03080 0.19 +1.1
680,953 + ABIE51_RS03080 0.19 +0.2
680,954 - ABIE51_RS03080 0.20 -0.1
680,954 - ABIE51_RS03080 0.20 -0.1
680,954 - ABIE51_RS03080 0.20 +0.7
680,954 - ABIE51_RS03080 0.20 +0.1
680,954 - ABIE51_RS03080 0.20 -0.2
680,956 + ABIE51_RS03080 0.20 -0.0
680,956 + ABIE51_RS03080 0.20 +0.3
680,956 + ABIE51_RS03080 0.20 +1.0
680,957 - ABIE51_RS03080 0.20 +0.2
680,957 - ABIE51_RS03080 0.20 +0.6
681,109 + ABIE51_RS03080 0.52 +2.3
681,109 + ABIE51_RS03080 0.52 -0.5
681,109 + ABIE51_RS03080 0.52 +0.1
681,109 + ABIE51_RS03080 0.52 +0.4
681,110 - ABIE51_RS03080 0.52 +1.3
681,110 - ABIE51_RS03080 0.52 +1.1
681,110 - ABIE51_RS03080 0.52 -0.1
681,110 - ABIE51_RS03080 0.52 +1.4
681,110 - ABIE51_RS03080 0.52 +0.6
681,110 - ABIE51_RS03080 0.52 -0.4
681,139 + ABIE51_RS03080 0.58 +0.3
681,139 + ABIE51_RS03080 0.58 +1.0
681,140 - ABIE51_RS03080 0.58 -0.2
681,140 - ABIE51_RS03080 0.58 -0.3
681,140 - ABIE51_RS03080 0.58 +0.3
681,220 + ABIE51_RS03080 0.75 -0.1
681,274 + ABIE51_RS03080 0.86 +0.3
681,275 - ABIE51_RS03080 0.86 -0.2
681,309 + +0.1
681,309 + +0.5
681,309 + +0.3
681,309 + +1.3
681,309 + -1.5
681,310 - +0.2
681,310 - -0.4
681,310 - +0.3
681,310 - +0.1
681,310 - +0.1
681,722 + ABIE51_RS03085 0.32 -1.1
681,722 + ABIE51_RS03085 0.32 +1.3
681,722 + ABIE51_RS03085 0.32 -0.0
681,723 - ABIE51_RS03085 0.32 +1.1
681,723 - ABIE51_RS03085 0.32 -0.5
681,723 - ABIE51_RS03085 0.32 -0.1
681,723 - ABIE51_RS03085 0.32 +2.1
682,247 + ABIE51_RS03085 0.80 +0.9
682,248 - ABIE51_RS03085 0.80 -0.1

Or see this region's nucleotide sequence