Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01640 and ABIE51_RS01645 are separated by 113 nucleotides ABIE51_RS01645 and ABIE51_RS01650 are separated by 229 nucleotides ABIE51_RS01650 and ABIE51_RS01655 are separated by 8 nucleotides
ABIE51_RS01640: ABIE51_RS01640 - indolepyruvate ferredoxin oxidoreductase family protein, at 360,159 to 363,845
_RS01640
ABIE51_RS01645: ABIE51_RS01645 - MmcQ/YjbR family DNA-binding protein, at 363,959 to 364,318
_RS01645
ABIE51_RS01650: ABIE51_RS01650 - MFS transporter, at 364,548 to 366,215
_RS01650
ABIE51_RS01655: ABIE51_RS01655 - DcaP family trimeric outer membrane transporter, at 366,224 to 367,693
_RS01655
Position (kb) 364
365
366
367 Strain fitness (log2 ratio) -1
0
1
2 at 363.648 kb on + strand at 363.649 kb on - strand at 363.649 kb on - strand at 363.744 kb on + strand at 363.745 kb on - strand at 363.856 kb on + strand at 363.984 kb on - strand at 364.232 kb on + strand, within ABIE51_RS01645 at 364.233 kb on - strand, within ABIE51_RS01645 at 364.396 kb on - strand at 364.555 kb on + strand at 364.555 kb on + strand at 364.648 kb on + strand at 364.648 kb on + strand at 364.649 kb on - strand at 364.651 kb on + strand at 364.651 kb on + strand at 364.651 kb on + strand at 364.652 kb on - strand at 364.652 kb on - strand at 364.652 kb on - strand at 364.652 kb on - strand at 364.729 kb on + strand, within ABIE51_RS01650 at 364.802 kb on - strand, within ABIE51_RS01650 at 364.802 kb on - strand, within ABIE51_RS01650 at 364.817 kb on - strand, within ABIE51_RS01650 at 365.236 kb on + strand, within ABIE51_RS01650 at 365.237 kb on - strand, within ABIE51_RS01650 at 365.401 kb on + strand, within ABIE51_RS01650 at 365.410 kb on + strand, within ABIE51_RS01650 at 365.666 kb on - strand, within ABIE51_RS01650 at 365.779 kb on + strand, within ABIE51_RS01650 at 365.779 kb on + strand, within ABIE51_RS01650 at 365.780 kb on - strand, within ABIE51_RS01650 at 365.780 kb on - strand, within ABIE51_RS01650 at 365.780 kb on - strand, within ABIE51_RS01650 at 365.780 kb on - strand, within ABIE51_RS01650 at 365.780 kb on - strand, within ABIE51_RS01650 at 365.798 kb on - strand, within ABIE51_RS01650 at 365.875 kb on + strand, within ABIE51_RS01650 at 365.876 kb on - strand, within ABIE51_RS01650 at 365.941 kb on + strand, within ABIE51_RS01650 at 365.942 kb on - strand, within ABIE51_RS01650 at 366.106 kb on + strand at 366.106 kb on + strand at 366.106 kb on + strand at 366.106 kb on + strand at 366.107 kb on - strand at 366.116 kb on - strand at 366.225 kb on + strand at 366.225 kb on + strand at 366.226 kb on - strand at 366.226 kb on - strand at 366.235 kb on - strand at 366.235 kb on - strand at 366.235 kb on - strand at 366.342 kb on + strand at 366.342 kb on + strand at 366.343 kb on - strand at 366.343 kb on - strand at 366.430 kb on - strand, within ABIE51_RS01655 at 366.558 kb on + strand, within ABIE51_RS01655 at 366.592 kb on - strand, within ABIE51_RS01655 at 366.592 kb on - strand, within ABIE51_RS01655 at 366.645 kb on + strand, within ABIE51_RS01655 at 366.777 kb on + strand, within ABIE51_RS01655 at 366.849 kb on + strand, within ABIE51_RS01655 at 366.849 kb on + strand, within ABIE51_RS01655 at 366.849 kb on + strand, within ABIE51_RS01655 at 367.029 kb on + strand, within ABIE51_RS01655 at 367.029 kb on + strand, within ABIE51_RS01655 at 367.029 kb on + strand, within ABIE51_RS01655 at 367.029 kb on + strand, within ABIE51_RS01655 at 367.029 kb on + strand, within ABIE51_RS01655 at 367.029 kb on + strand, within ABIE51_RS01655 at 367.030 kb on - strand, within ABIE51_RS01655 at 367.053 kb on + strand, within ABIE51_RS01655 at 367.053 kb on + strand, within ABIE51_RS01655 at 367.122 kb on + strand, within ABIE51_RS01655
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 363,648 + +0.0 363,649 - -0.7 363,649 - +0.1 363,744 + -0.5 363,745 - +0.1 363,856 + -1.0 363,984 - -0.9 364,232 + ABIE51_RS01645 0.76 -0.2 364,233 - ABIE51_RS01645 0.76 -0.8 364,396 - +0.7 364,555 + -0.5 364,555 + +0.6 364,648 + +0.3 364,648 + +2.1 364,649 - +1.1 364,651 + -0.5 364,651 + +0.1 364,651 + +0.4 364,652 - +1.3 364,652 - +1.0 364,652 - +0.3 364,652 - +0.6 364,729 + ABIE51_RS01650 0.11 +0.8 364,802 - ABIE51_RS01650 0.15 -0.5 364,802 - ABIE51_RS01650 0.15 +1.7 364,817 - ABIE51_RS01650 0.16 -0.4 365,236 + ABIE51_RS01650 0.41 +0.7 365,237 - ABIE51_RS01650 0.41 -0.2 365,401 + ABIE51_RS01650 0.51 +1.1 365,410 + ABIE51_RS01650 0.52 -0.1 365,666 - ABIE51_RS01650 0.67 -1.2 365,779 + ABIE51_RS01650 0.74 +0.0 365,779 + ABIE51_RS01650 0.74 -0.5 365,780 - ABIE51_RS01650 0.74 -0.8 365,780 - ABIE51_RS01650 0.74 +1.1 365,780 - ABIE51_RS01650 0.74 -0.7 365,780 - ABIE51_RS01650 0.74 -0.6 365,780 - ABIE51_RS01650 0.74 +0.9 365,798 - ABIE51_RS01650 0.75 -0.5 365,875 + ABIE51_RS01650 0.80 -0.6 365,876 - ABIE51_RS01650 0.80 +0.9 365,941 + ABIE51_RS01650 0.84 +0.3 365,942 - ABIE51_RS01650 0.84 -0.7 366,106 + -0.9 366,106 + -0.5 366,106 + +0.1 366,106 + +0.1 366,107 - -0.5 366,116 - +0.9 366,225 + -0.7 366,225 + +0.0 366,226 - +0.0 366,226 - +1.4 366,235 - +0.5 366,235 - -1.0 366,235 - -0.3 366,342 + -0.2 366,342 + +0.0 366,343 - -0.8 366,343 - +0.4 366,430 - ABIE51_RS01655 0.14 -0.1 366,558 + ABIE51_RS01655 0.23 -0.8 366,592 - ABIE51_RS01655 0.25 -0.7 366,592 - ABIE51_RS01655 0.25 -0.7 366,645 + ABIE51_RS01655 0.29 +0.0 366,777 + ABIE51_RS01655 0.38 +1.3 366,849 + ABIE51_RS01655 0.43 +0.5 366,849 + ABIE51_RS01655 0.43 -1.2 366,849 + ABIE51_RS01655 0.43 +0.0 367,029 + ABIE51_RS01655 0.55 -0.7 367,029 + ABIE51_RS01655 0.55 -0.9 367,029 + ABIE51_RS01655 0.55 -0.7 367,029 + ABIE51_RS01655 0.55 -0.2 367,029 + ABIE51_RS01655 0.55 +0.0 367,029 + ABIE51_RS01655 0.55 -1.0 367,030 - ABIE51_RS01655 0.55 +0.3 367,053 + ABIE51_RS01655 0.56 -0.0 367,053 + ABIE51_RS01655 0.56 -0.1 367,122 + ABIE51_RS01655 0.61 +0.5
Or see this region's nucleotide sequence