Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS00860

Experiment: 2-Deoxy-D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS00855 and ABIE51_RS00860 are separated by 229 nucleotidesABIE51_RS00860 and ABIE51_RS00865 are separated by 44 nucleotides ABIE51_RS00855: ABIE51_RS00855 - sigma-54 dependent transcriptional regulator, at 178,479 to 179,888 _RS00855 ABIE51_RS00860: ABIE51_RS00860 - class 1 fructose-bisphosphatase, at 180,118 to 181,158 _RS00860 ABIE51_RS00865: ABIE51_RS00865 - MBL fold metallo-hydrolase, at 181,203 to 182,237 _RS00865 Position (kb) 180 181 182Strain fitness (log2 ratio) -2 -1 0 1at 179.542 kb on + strand, within ABIE51_RS00855at 179.542 kb on + strand, within ABIE51_RS00855at 179.542 kb on + strand, within ABIE51_RS00855at 179.542 kb on + strand, within ABIE51_RS00855at 179.543 kb on - strand, within ABIE51_RS00855at 179.543 kb on - strand, within ABIE51_RS00855at 179.543 kb on - strand, within ABIE51_RS00855at 179.543 kb on - strand, within ABIE51_RS00855at 179.543 kb on - strand, within ABIE51_RS00855at 179.543 kb on - strand, within ABIE51_RS00855at 179.548 kb on + strand, within ABIE51_RS00855at 179.549 kb on - strand, within ABIE51_RS00855at 179.549 kb on - strand, within ABIE51_RS00855at 179.554 kb on + strand, within ABIE51_RS00855at 179.554 kb on + strand, within ABIE51_RS00855at 179.555 kb on - strand, within ABIE51_RS00855at 179.555 kb on - strand, within ABIE51_RS00855at 179.574 kb on + strand, within ABIE51_RS00855at 179.833 kb on + strandat 179.833 kb on + strandat 179.833 kb on + strandat 179.833 kb on + strandat 179.833 kb on + strandat 179.834 kb on - strandat 179.834 kb on - strandat 179.834 kb on - strandat 179.834 kb on - strandat 179.834 kb on - strandat 179.834 kb on - strandat 179.908 kb on + strandat 179.908 kb on + strandat 179.944 kb on + strandat 179.944 kb on + strandat 179.945 kb on - strandat 179.945 kb on - strandat 179.953 kb on + strandat 179.953 kb on + strandat 179.953 kb on + strandat 179.953 kb on + strandat 179.954 kb on - strandat 179.954 kb on - strandat 180.091 kb on + strandat 180.091 kb on + strandat 180.091 kb on + strandat 180.106 kb on + strandat 180.106 kb on + strandat 180.106 kb on + strandat 180.107 kb on - strandat 180.119 kb on + strandat 180.119 kb on + strandat 180.119 kb on + strandat 180.119 kb on + strandat 180.120 kb on - strandat 180.299 kb on + strand, within ABIE51_RS00860at 180.299 kb on + strand, within ABIE51_RS00860at 180.299 kb on + strand, within ABIE51_RS00860at 180.299 kb on + strand, within ABIE51_RS00860at 180.299 kb on + strand, within ABIE51_RS00860at 180.299 kb on + strand, within ABIE51_RS00860at 180.299 kb on + strand, within ABIE51_RS00860at 180.300 kb on - strand, within ABIE51_RS00860at 180.300 kb on - strand, within ABIE51_RS00860at 180.300 kb on - strand, within ABIE51_RS00860at 180.300 kb on - strand, within ABIE51_RS00860at 180.300 kb on - strand, within ABIE51_RS00860at 180.300 kb on - strand, within ABIE51_RS00860at 180.470 kb on + strand, within ABIE51_RS00860at 180.648 kb on - strand, within ABIE51_RS00860at 180.812 kb on + strand, within ABIE51_RS00860at 180.812 kb on + strand, within ABIE51_RS00860at 180.812 kb on + strand, within ABIE51_RS00860at 180.812 kb on + strand, within ABIE51_RS00860at 180.813 kb on - strand, within ABIE51_RS00860at 180.813 kb on - strand, within ABIE51_RS00860at 180.813 kb on - strand, within ABIE51_RS00860at 180.813 kb on - strand, within ABIE51_RS00860at 180.813 kb on - strand, within ABIE51_RS00860at 180.813 kb on - strand, within ABIE51_RS00860at 180.813 kb on - strand, within ABIE51_RS00860at 180.813 kb on - strand, within ABIE51_RS00860at 180.813 kb on - strand, within ABIE51_RS00860at 181.035 kb on - strand, within ABIE51_RS00860at 181.121 kb on + strandat 181.122 kb on - strandat 181.204 kb on + strandat 181.204 kb on + strandat 181.205 kb on - strandat 181.322 kb on + strand, within ABIE51_RS00865at 181.323 kb on - strand, within ABIE51_RS00865at 181.459 kb on + strand, within ABIE51_RS00865at 181.531 kb on + strand, within ABIE51_RS00865at 181.531 kb on + strand, within ABIE51_RS00865at 181.531 kb on + strand, within ABIE51_RS00865at 181.532 kb on - strand, within ABIE51_RS00865at 181.816 kb on + strand, within ABIE51_RS00865at 181.816 kb on + strand, within ABIE51_RS00865at 181.816 kb on + strand, within ABIE51_RS00865at 181.816 kb on + strand, within ABIE51_RS00865at 181.816 kb on + strand, within ABIE51_RS00865at 181.816 kb on + strand, within ABIE51_RS00865at 181.816 kb on + strand, within ABIE51_RS00865at 181.817 kb on - strand, within ABIE51_RS00865at 181.817 kb on - strand, within ABIE51_RS00865at 181.817 kb on - strand, within ABIE51_RS00865at 181.817 kb on - strand, within ABIE51_RS00865at 181.817 kb on - strand, within ABIE51_RS00865at 181.817 kb on - strand, within ABIE51_RS00865at 181.817 kb on - strand, within ABIE51_RS00865

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
remove
179,542 + ABIE51_RS00855 0.75 -0.4
179,542 + ABIE51_RS00855 0.75 +1.6
179,542 + ABIE51_RS00855 0.75 -0.1
179,542 + ABIE51_RS00855 0.75 +0.2
179,543 - ABIE51_RS00855 0.75 +0.1
179,543 - ABIE51_RS00855 0.75 -0.6
179,543 - ABIE51_RS00855 0.75 -0.0
179,543 - ABIE51_RS00855 0.75 +1.4
179,543 - ABIE51_RS00855 0.75 -1.4
179,543 - ABIE51_RS00855 0.75 -1.2
179,548 + ABIE51_RS00855 0.76 -1.3
179,549 - ABIE51_RS00855 0.76 +0.7
179,549 - ABIE51_RS00855 0.76 +0.2
179,554 + ABIE51_RS00855 0.76 +0.1
179,554 + ABIE51_RS00855 0.76 +1.3
179,555 - ABIE51_RS00855 0.76 +0.1
179,555 - ABIE51_RS00855 0.76 +0.0
179,574 + ABIE51_RS00855 0.78 -0.3
179,833 + -0.2
179,833 + -0.2
179,833 + +0.1
179,833 + +0.7
179,833 + -0.4
179,834 - -1.5
179,834 - -0.0
179,834 - -1.6
179,834 - -0.3
179,834 - +0.2
179,834 - -0.6
179,908 + -0.9
179,908 + -0.7
179,944 + -0.0
179,944 + -1.8
179,945 - -0.1
179,945 - +0.9
179,953 + +0.3
179,953 + -1.0
179,953 + -0.7
179,953 + +0.9
179,954 - +0.6
179,954 - -0.5
180,091 + -0.9
180,091 + -0.1
180,091 + -0.2
180,106 + +0.5
180,106 + -0.9
180,106 + -0.3
180,107 - -0.3
180,119 + -0.1
180,119 + +0.3
180,119 + +0.1
180,119 + +0.2
180,120 - -0.6
180,299 + ABIE51_RS00860 0.17 +1.1
180,299 + ABIE51_RS00860 0.17 -2.1
180,299 + ABIE51_RS00860 0.17 -0.1
180,299 + ABIE51_RS00860 0.17 +0.3
180,299 + ABIE51_RS00860 0.17 -0.5
180,299 + ABIE51_RS00860 0.17 -0.0
180,299 + ABIE51_RS00860 0.17 -0.9
180,300 - ABIE51_RS00860 0.17 -1.1
180,300 - ABIE51_RS00860 0.17 -0.8
180,300 - ABIE51_RS00860 0.17 -2.2
180,300 - ABIE51_RS00860 0.17 -0.2
180,300 - ABIE51_RS00860 0.17 -0.5
180,300 - ABIE51_RS00860 0.17 -2.1
180,470 + ABIE51_RS00860 0.34 -1.4
180,648 - ABIE51_RS00860 0.51 +0.5
180,812 + ABIE51_RS00860 0.67 -0.4
180,812 + ABIE51_RS00860 0.67 -1.6
180,812 + ABIE51_RS00860 0.67 +0.7
180,812 + ABIE51_RS00860 0.67 +0.6
180,813 - ABIE51_RS00860 0.67 +0.3
180,813 - ABIE51_RS00860 0.67 -1.2
180,813 - ABIE51_RS00860 0.67 +0.0
180,813 - ABIE51_RS00860 0.67 -0.4
180,813 - ABIE51_RS00860 0.67 -2.4
180,813 - ABIE51_RS00860 0.67 -0.7
180,813 - ABIE51_RS00860 0.67 +0.3
180,813 - ABIE51_RS00860 0.67 +1.0
180,813 - ABIE51_RS00860 0.67 -1.0
181,035 - ABIE51_RS00860 0.88 -0.9
181,121 + -1.2
181,122 - +0.5
181,204 + -0.2
181,204 + +0.2
181,205 - +0.9
181,322 + ABIE51_RS00865 0.11 -0.2
181,323 - ABIE51_RS00865 0.12 -1.1
181,459 + ABIE51_RS00865 0.25 +0.6
181,531 + ABIE51_RS00865 0.32 +1.5
181,531 + ABIE51_RS00865 0.32 +0.2
181,531 + ABIE51_RS00865 0.32 +0.7
181,532 - ABIE51_RS00865 0.32 +0.5
181,816 + ABIE51_RS00865 0.59 -0.3
181,816 + ABIE51_RS00865 0.59 +0.1
181,816 + ABIE51_RS00865 0.59 -0.0
181,816 + ABIE51_RS00865 0.59 -0.4
181,816 + ABIE51_RS00865 0.59 +0.4
181,816 + ABIE51_RS00865 0.59 +0.1
181,816 + ABIE51_RS00865 0.59 +1.2
181,817 - ABIE51_RS00865 0.59 +0.2
181,817 - ABIE51_RS00865 0.59 -1.7
181,817 - ABIE51_RS00865 0.59 +0.9
181,817 - ABIE51_RS00865 0.59 +1.5
181,817 - ABIE51_RS00865 0.59 -0.1
181,817 - ABIE51_RS00865 0.59 +0.3
181,817 - ABIE51_RS00865 0.59 +0.4

Or see this region's nucleotide sequence