Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08860

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08855 and MMP_RS08860 are separated by 11 nucleotidesMMP_RS08860 and MMP_RS08865 are separated by 31 nucleotides MMP_RS08855: MMP_RS08855 - hypothetical protein, at 1,657,686 to 1,659,479 _RS08855 MMP_RS08860: MMP_RS08860 - MinD/ParA family protein, at 1,659,491 to 1,660,279 _RS08860 MMP_RS08865: MMP_RS08865 - imidazole glycerol phosphate synthase subunit HisF, at 1,660,311 to 1,661,129 _RS08865 Position (kb) 1659 1660 1661Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1658.712 kb on + strand, within MMP_RS08855at 1658.880 kb on + strand, within MMP_RS08855at 1658.990 kb on + strand, within MMP_RS08855at 1659.415 kb on - strandat 1659.560 kb on - strandat 1659.694 kb on - strand, within MMP_RS08860at 1659.696 kb on - strand, within MMP_RS08860at 1659.829 kb on + strand, within MMP_RS08860at 1659.902 kb on + strand, within MMP_RS08860at 1659.971 kb on - strand, within MMP_RS08860at 1659.983 kb on + strand, within MMP_RS08860at 1659.992 kb on + strand, within MMP_RS08860at 1660.212 kb on - strandat 1660.800 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,658,712 + MMP_RS08855 0.57 +0.1
1,658,880 + MMP_RS08855 0.67 +0.8
1,658,990 + MMP_RS08855 0.73 +0.8
1,659,415 - -5.3
1,659,560 - -6.5
1,659,694 - MMP_RS08860 0.26 -7.1
1,659,696 - MMP_RS08860 0.26 -5.8
1,659,829 + MMP_RS08860 0.43 -6.0
1,659,902 + MMP_RS08860 0.52 -6.0
1,659,971 - MMP_RS08860 0.61 -5.9
1,659,983 + MMP_RS08860 0.62 -6.0
1,659,992 + MMP_RS08860 0.63 -4.7
1,660,212 - -4.7
1,660,800 - -3.5

Or see this region's nucleotide sequence