Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08850

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08840 and MMP_RS08845 are separated by 55 nucleotidesMMP_RS08845 and MMP_RS08850 are separated by 170 nucleotidesMMP_RS08850 and MMP_RS08855 are separated by 194 nucleotides MMP_RS08840: MMP_RS08840 - class I SAM-dependent methyltransferase, at 1,653,262 to 1,654,293 _RS08840 MMP_RS08845: MMP_RS08845 - archaellum operon transcriptional activator EarA family protein, at 1,654,349 to 1,654,666 _RS08845 MMP_RS08850: MMP_RS08850 - hypothetical protein, at 1,654,837 to 1,657,491 _RS08850 MMP_RS08855: MMP_RS08855 - hypothetical protein, at 1,657,686 to 1,659,479 _RS08855 Position (kb) 1654 1655 1656 1657 1658Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 1654.093 kb on - strand, within MMP_RS08840at 1654.147 kb on + strand, within MMP_RS08840at 1654.165 kb on - strand, within MMP_RS08840at 1654.196 kb on + strandat 1654.222 kb on + strandat 1654.265 kb on - strandat 1654.294 kb on + strandat 1654.336 kb on + strandat 1654.567 kb on + strand, within MMP_RS08845at 1654.583 kb on - strand, within MMP_RS08845at 1654.583 kb on - strand, within MMP_RS08845at 1654.583 kb on - strand, within MMP_RS08845at 1654.583 kb on - strand, within MMP_RS08845at 1654.583 kb on - strand, within MMP_RS08845at 1654.584 kb on + strand, within MMP_RS08845at 1654.590 kb on - strand, within MMP_RS08845at 1654.590 kb on - strand, within MMP_RS08845at 1654.591 kb on + strand, within MMP_RS08845at 1654.591 kb on + strand, within MMP_RS08845at 1654.591 kb on + strand, within MMP_RS08845at 1654.593 kb on + strand, within MMP_RS08845at 1654.639 kb on - strandat 1654.658 kb on + strandat 1654.662 kb on + strandat 1654.662 kb on + strandat 1654.717 kb on - strandat 1654.737 kb on + strandat 1654.757 kb on + strandat 1654.757 kb on + strandat 1654.994 kb on + strandat 1655.084 kb on - strandat 1655.084 kb on - strandat 1655.132 kb on + strand, within MMP_RS08850at 1655.173 kb on + strand, within MMP_RS08850at 1655.230 kb on + strand, within MMP_RS08850at 1655.230 kb on + strand, within MMP_RS08850at 1655.268 kb on + strand, within MMP_RS08850at 1655.287 kb on - strand, within MMP_RS08850at 1655.287 kb on - strand, within MMP_RS08850at 1655.321 kb on + strand, within MMP_RS08850at 1655.321 kb on + strand, within MMP_RS08850at 1655.350 kb on - strand, within MMP_RS08850at 1655.351 kb on + strand, within MMP_RS08850at 1655.353 kb on + strand, within MMP_RS08850at 1655.356 kb on - strand, within MMP_RS08850at 1655.416 kb on - strand, within MMP_RS08850at 1655.416 kb on - strand, within MMP_RS08850at 1655.427 kb on + strand, within MMP_RS08850at 1655.452 kb on - strand, within MMP_RS08850at 1655.452 kb on - strand, within MMP_RS08850at 1655.498 kb on + strand, within MMP_RS08850at 1655.587 kb on - strand, within MMP_RS08850at 1655.588 kb on + strand, within MMP_RS08850at 1655.615 kb on + strand, within MMP_RS08850at 1655.692 kb on - strand, within MMP_RS08850at 1655.695 kb on + strand, within MMP_RS08850at 1655.695 kb on + strand, within MMP_RS08850at 1655.825 kb on + strand, within MMP_RS08850at 1655.833 kb on - strand, within MMP_RS08850at 1655.840 kb on + strand, within MMP_RS08850at 1655.844 kb on - strand, within MMP_RS08850at 1655.845 kb on + strand, within MMP_RS08850at 1655.872 kb on + strand, within MMP_RS08850at 1655.930 kb on + strand, within MMP_RS08850at 1655.947 kb on - strand, within MMP_RS08850at 1656.249 kb on - strand, within MMP_RS08850at 1656.273 kb on + strand, within MMP_RS08850at 1656.278 kb on - strand, within MMP_RS08850at 1656.286 kb on + strand, within MMP_RS08850at 1656.348 kb on + strand, within MMP_RS08850at 1656.355 kb on + strand, within MMP_RS08850at 1656.418 kb on - strand, within MMP_RS08850at 1656.447 kb on + strand, within MMP_RS08850at 1656.451 kb on + strand, within MMP_RS08850at 1656.624 kb on - strand, within MMP_RS08850at 1656.687 kb on + strand, within MMP_RS08850at 1656.687 kb on + strand, within MMP_RS08850at 1656.690 kb on - strand, within MMP_RS08850at 1656.693 kb on + strand, within MMP_RS08850at 1656.700 kb on + strand, within MMP_RS08850at 1656.744 kb on - strand, within MMP_RS08850at 1656.744 kb on - strand, within MMP_RS08850at 1656.744 kb on - strand, within MMP_RS08850at 1656.744 kb on - strand, within MMP_RS08850at 1656.745 kb on + strand, within MMP_RS08850at 1656.745 kb on + strand, within MMP_RS08850at 1656.745 kb on + strand, within MMP_RS08850at 1656.888 kb on + strand, within MMP_RS08850at 1656.891 kb on + strand, within MMP_RS08850at 1656.895 kb on + strand, within MMP_RS08850at 1656.947 kb on + strand, within MMP_RS08850at 1656.947 kb on + strand, within MMP_RS08850at 1657.007 kb on + strand, within MMP_RS08850at 1657.061 kb on - strand, within MMP_RS08850at 1657.062 kb on + strand, within MMP_RS08850at 1657.066 kb on + strand, within MMP_RS08850at 1657.094 kb on + strand, within MMP_RS08850at 1657.321 kb on - strandat 1657.347 kb on - strandat 1657.359 kb on - strandat 1657.360 kb on + strandat 1657.360 kb on + strandat 1657.361 kb on - strandat 1657.362 kb on + strandat 1657.362 kb on + strandat 1657.491 kb on - strandat 1657.609 kb on - strandat 1657.630 kb on - strandat 1657.652 kb on + strandat 1657.655 kb on - strandat 1657.655 kb on - strandat 1657.713 kb on + strandat 1657.713 kb on + strandat 1657.724 kb on - strandat 1657.724 kb on - strandat 1657.725 kb on + strandat 1657.725 kb on + strandat 1657.725 kb on + strandat 1657.741 kb on - strandat 1657.742 kb on + strandat 1657.755 kb on - strandat 1657.781 kb on - strandat 1657.785 kb on - strandat 1657.786 kb on + strandat 1657.804 kb on - strandat 1657.804 kb on - strandat 1657.804 kb on - strandat 1657.805 kb on + strandat 1657.805 kb on + strandat 1657.805 kb on + strandat 1657.812 kb on + strandat 1657.847 kb on - strandat 1657.847 kb on - strandat 1657.848 kb on + strandat 1657.848 kb on + strandat 1657.855 kb on - strandat 1657.856 kb on + strandat 1657.856 kb on + strandat 1657.856 kb on + strandat 1657.858 kb on - strandat 1657.859 kb on + strandat 1657.859 kb on + strandat 1657.859 kb on + strandat 1657.859 kb on + strandat 1657.859 kb on + strandat 1657.860 kb on - strandat 1657.861 kb on + strandat 1657.861 kb on + strandat 1657.861 kb on + strandat 1657.947 kb on + strand, within MMP_RS08855at 1658.243 kb on - strand, within MMP_RS08855at 1658.244 kb on + strand, within MMP_RS08855at 1658.399 kb on + strand, within MMP_RS08855at 1658.445 kb on - strand, within MMP_RS08855at 1658.446 kb on + strand, within MMP_RS08855at 1658.446 kb on + strand, within MMP_RS08855at 1658.446 kb on + strand, within MMP_RS08855at 1658.446 kb on + strand, within MMP_RS08855at 1658.474 kb on - strand, within MMP_RS08855

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,654,093 - MMP_RS08840 0.81 -6.8
1,654,147 + MMP_RS08840 0.86 -5.5
1,654,165 - MMP_RS08840 0.88 -7.2
1,654,196 + -4.3
1,654,222 + -6.2
1,654,265 - -4.8
1,654,294 + -4.2
1,654,336 + -4.5
1,654,567 + MMP_RS08845 0.69 +1.0
1,654,583 - MMP_RS08845 0.74 +1.6
1,654,583 - MMP_RS08845 0.74 +1.3
1,654,583 - MMP_RS08845 0.74 +1.0
1,654,583 - MMP_RS08845 0.74 +1.3
1,654,583 - MMP_RS08845 0.74 +1.5
1,654,584 + MMP_RS08845 0.74 +1.7
1,654,590 - MMP_RS08845 0.76 +1.2
1,654,590 - MMP_RS08845 0.76 +1.0
1,654,591 + MMP_RS08845 0.76 +1.1
1,654,591 + MMP_RS08845 0.76 +1.0
1,654,591 + MMP_RS08845 0.76 +1.4
1,654,593 + MMP_RS08845 0.77 +1.2
1,654,639 - +2.9
1,654,658 + +0.9
1,654,662 + +1.0
1,654,662 + +1.2
1,654,717 - +0.7
1,654,737 + +1.2
1,654,757 + +1.3
1,654,757 + +0.8
1,654,994 + +1.3
1,655,084 - +1.9
1,655,084 - +1.1
1,655,132 + MMP_RS08850 0.11 +1.6
1,655,173 + MMP_RS08850 0.13 +1.4
1,655,230 + MMP_RS08850 0.15 +1.0
1,655,230 + MMP_RS08850 0.15 +0.9
1,655,268 + MMP_RS08850 0.16 +2.1
1,655,287 - MMP_RS08850 0.17 +1.4
1,655,287 - MMP_RS08850 0.17 +1.2
1,655,321 + MMP_RS08850 0.18 +1.1
1,655,321 + MMP_RS08850 0.18 +1.8
1,655,350 - MMP_RS08850 0.19 +1.4
1,655,351 + MMP_RS08850 0.19 +1.0
1,655,353 + MMP_RS08850 0.19 +1.5
1,655,356 - MMP_RS08850 0.20 +0.5
1,655,416 - MMP_RS08850 0.22 +1.5
1,655,416 - MMP_RS08850 0.22 +1.5
1,655,427 + MMP_RS08850 0.22 +1.6
1,655,452 - MMP_RS08850 0.23 +1.1
1,655,452 - MMP_RS08850 0.23 +1.0
1,655,498 + MMP_RS08850 0.25 +1.6
1,655,587 - MMP_RS08850 0.28 +0.6
1,655,588 + MMP_RS08850 0.28 +0.7
1,655,615 + MMP_RS08850 0.29 +0.8
1,655,692 - MMP_RS08850 0.32 +0.9
1,655,695 + MMP_RS08850 0.32 +1.5
1,655,695 + MMP_RS08850 0.32 +1.3
1,655,825 + MMP_RS08850 0.37 +1.4
1,655,833 - MMP_RS08850 0.38 +1.4
1,655,840 + MMP_RS08850 0.38 +1.1
1,655,844 - MMP_RS08850 0.38 +1.4
1,655,845 + MMP_RS08850 0.38 +1.0
1,655,872 + MMP_RS08850 0.39 +1.4
1,655,930 + MMP_RS08850 0.41 +1.8
1,655,947 - MMP_RS08850 0.42 +1.4
1,656,249 - MMP_RS08850 0.53 +1.0
1,656,273 + MMP_RS08850 0.54 +1.0
1,656,278 - MMP_RS08850 0.54 +1.8
1,656,286 + MMP_RS08850 0.55 +1.1
1,656,348 + MMP_RS08850 0.57 +1.9
1,656,355 + MMP_RS08850 0.57 +1.2
1,656,418 - MMP_RS08850 0.60 +1.3
1,656,447 + MMP_RS08850 0.61 +1.5
1,656,451 + MMP_RS08850 0.61 +1.9
1,656,624 - MMP_RS08850 0.67 +1.3
1,656,687 + MMP_RS08850 0.70 +1.4
1,656,687 + MMP_RS08850 0.70 +1.2
1,656,690 - MMP_RS08850 0.70 +1.9
1,656,693 + MMP_RS08850 0.70 +1.0
1,656,700 + MMP_RS08850 0.70 +1.0
1,656,744 - MMP_RS08850 0.72 +1.3
1,656,744 - MMP_RS08850 0.72 +1.4
1,656,744 - MMP_RS08850 0.72 +1.1
1,656,744 - MMP_RS08850 0.72 +1.0
1,656,745 + MMP_RS08850 0.72 +1.1
1,656,745 + MMP_RS08850 0.72 +1.0
1,656,745 + MMP_RS08850 0.72 +1.2
1,656,888 + MMP_RS08850 0.77 +1.5
1,656,891 + MMP_RS08850 0.77 +1.3
1,656,895 + MMP_RS08850 0.78 +1.5
1,656,947 + MMP_RS08850 0.79 +1.5
1,656,947 + MMP_RS08850 0.79 +0.8
1,657,007 + MMP_RS08850 0.82 +0.7
1,657,061 - MMP_RS08850 0.84 +0.9
1,657,062 + MMP_RS08850 0.84 +1.4
1,657,066 + MMP_RS08850 0.84 +1.3
1,657,094 + MMP_RS08850 0.85 +1.8
1,657,321 - +0.8
1,657,347 - +1.6
1,657,359 - +0.9
1,657,360 + +1.2
1,657,360 + +0.6
1,657,361 - +1.0
1,657,362 + +1.4
1,657,362 + +1.2
1,657,491 - +1.2
1,657,609 - +0.9
1,657,630 - +1.3
1,657,652 + +0.8
1,657,655 - +0.5
1,657,655 - +0.8
1,657,713 + -0.2
1,657,713 + +0.6
1,657,724 - -0.9
1,657,724 - -0.5
1,657,725 + +0.0
1,657,725 + +0.4
1,657,725 + +0.3
1,657,741 - -0.5
1,657,742 + +1.1
1,657,755 - -0.1
1,657,781 - -0.5
1,657,785 - +0.1
1,657,786 + +0.4
1,657,804 - +0.1
1,657,804 - +0.2
1,657,804 - -0.6
1,657,805 + -0.2
1,657,805 + +0.9
1,657,805 + -0.1
1,657,812 + +0.6
1,657,847 - +0.1
1,657,847 - -0.4
1,657,848 + +0.7
1,657,848 + +0.4
1,657,855 - -0.6
1,657,856 + +0.2
1,657,856 + +0.2
1,657,856 + +1.1
1,657,858 - +0.2
1,657,859 + +1.0
1,657,859 + +0.7
1,657,859 + +0.7
1,657,859 + +0.3
1,657,859 + +0.8
1,657,860 - +0.2
1,657,861 + +0.3
1,657,861 + -4.9
1,657,861 + -0.1
1,657,947 + MMP_RS08855 0.15 +0.7
1,658,243 - MMP_RS08855 0.31 -0.0
1,658,244 + MMP_RS08855 0.31 +1.4
1,658,399 + MMP_RS08855 0.40 +0.6
1,658,445 - MMP_RS08855 0.42 -1.3
1,658,446 + MMP_RS08855 0.42 +0.6
1,658,446 + MMP_RS08855 0.42 +0.1
1,658,446 + MMP_RS08855 0.42 +1.3
1,658,446 + MMP_RS08855 0.42 +0.3
1,658,474 - MMP_RS08855 0.44 -0.4

Or see this region's nucleotide sequence