Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08790

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08775 and MMP_RS08780 are separated by 9 nucleotidesMMP_RS08780 and MMP_RS08785 are separated by 5 nucleotidesMMP_RS08785 and MMP_RS08790 are separated by 8 nucleotidesMMP_RS08790 and MMP_RS08795 are separated by 113 nucleotidesMMP_RS08795 and MMP_RS08800 are separated by 22 nucleotidesMMP_RS08800 and MMP_RS08805 overlap by 44 nucleotides MMP_RS08775: MMP_RS08775 - methanogenesis marker 9 domain-containing protein, at 1,645,101 to 1,645,556 _RS08775 MMP_RS08780: MMP_RS08780 - 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, at 1,645,566 to 1,646,231 _RS08780 MMP_RS08785: MMP_RS08785 - RNA-protein complex protein Nop10, at 1,646,237 to 1,646,392 _RS08785 MMP_RS08790: MMP_RS08790 - translation initiation factor IF-2 subunit alpha, at 1,646,401 to 1,647,198 _RS08790 MMP_RS08795: MMP_RS08795 - 30S ribosomal protein S27e, at 1,647,312 to 1,647,497 _RS08795 MMP_RS08800: MMP_RS08800 - 50S ribosomal protein L44e, at 1,647,520 to 1,647,801 _RS08800 MMP_RS08805: MMP_RS08805 - hypothetical protein, at 1,647,758 to 1,648,345 _RS08805 Position (kb) 1646 1647 1648Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1645.416 kb on - strand, within MMP_RS08775at 1645.513 kb on + strandat 1645.556 kb on - strandat 1645.556 kb on - strandat 1645.559 kb on + strandat 1645.567 kb on - strandat 1645.740 kb on - strandat 1645.740 kb on - strandat 1645.804 kb on + strandat 1645.804 kb on + strandat 1645.838 kb on - strandat 1645.850 kb on - strandat 1645.851 kb on + strandat 1645.917 kb on - strandat 1645.919 kb on - strandat 1645.967 kb on + strandat 1645.980 kb on + strandat 1646.021 kb on + strandat 1646.072 kb on - strandat 1646.095 kb on - strandat 1646.175 kb on - strandat 1646.175 kb on - strandat 1646.231 kb on - strandat 1646.277 kb on - strand, within MMP_RS08785at 1646.524 kb on - strand, within MMP_RS08790at 1646.550 kb on + strand, within MMP_RS08790at 1646.713 kb on - strand, within MMP_RS08790at 1647.112 kb on - strand, within MMP_RS08790at 1647.218 kb on - strandat 1647.219 kb on + strandat 1647.223 kb on - strandat 1647.224 kb on + strandat 1647.230 kb on + strandat 1647.240 kb on - strandat 1647.243 kb on + strandat 1647.250 kb on + strandat 1647.277 kb on - strandat 1647.278 kb on + strandat 1647.283 kb on - strandat 1647.304 kb on + strandat 1647.313 kb on - strandat 1647.319 kb on + strandat 1647.322 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,645,416 - MMP_RS08775 0.69 +1.0
1,645,513 + +0.4
1,645,556 - +1.1
1,645,556 - +0.5
1,645,559 + +0.4
1,645,567 - +0.9
1,645,740 - -4.2
1,645,740 - -5.8
1,645,804 + -4.9
1,645,804 + -5.4
1,645,838 - -5.2
1,645,850 - -3.3
1,645,851 + -5.0
1,645,917 - -3.0
1,645,919 - -4.2
1,645,967 + -4.6
1,645,980 + -5.4
1,646,021 + -3.9
1,646,072 - -4.9
1,646,095 - -5.2
1,646,175 - -3.0
1,646,175 - -4.8
1,646,231 - -4.7
1,646,277 - MMP_RS08785 0.26 -2.5
1,646,524 - MMP_RS08790 0.15 -1.8
1,646,550 + MMP_RS08790 0.19 -5.6
1,646,713 - MMP_RS08790 0.39 -4.7
1,647,112 - MMP_RS08790 0.89 -3.0
1,647,218 - -5.7
1,647,219 + -4.5
1,647,223 - -4.5
1,647,224 + -4.7
1,647,230 + -3.0
1,647,240 - -4.8
1,647,243 + -5.3
1,647,250 + -1.8
1,647,277 - +0.6
1,647,278 + +1.0
1,647,283 - -0.2
1,647,304 + +0.1
1,647,313 - -1.9
1,647,319 + +0.9
1,647,322 + -0.5

Or see this region's nucleotide sequence