Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08440

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08430 and MMP_RS08435 are separated by 76 nucleotidesMMP_RS08435 and MMP_RS08440 are separated by 6 nucleotidesMMP_RS08440 and MMP_RS08445 are separated by 24 nucleotidesMMP_RS08445 and MMP_RS08450 are separated by 21 nucleotides MMP_RS08430: MMP_RS08430 - HAD family hydrolase, at 1,583,208 to 1,584,014 _RS08430 MMP_RS08435: MMP_RS08435 - Era-like GTP-binding protein, at 1,584,091 to 1,584,645 _RS08435 MMP_RS08440: MMP_RS08440 - cell division protein SepF, at 1,584,652 to 1,585,041 _RS08440 MMP_RS08445: MMP_RS08445 - DUF2099 family protein, at 1,585,066 to 1,585,917 _RS08445 MMP_RS08450: MMP_RS08450 - isopentenyl phosphate kinase family protein, at 1,585,939 to 1,586,712 _RS08450 Position (kb) 1584 1585 1586Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1583.967 kb on - strandat 1583.973 kb on - strandat 1583.974 kb on + strandat 1584.034 kb on + strandat 1584.036 kb on - strandat 1584.037 kb on + strandat 1584.037 kb on + strandat 1584.055 kb on - strandat 1584.058 kb on - strandat 1584.060 kb on - strandat 1584.068 kb on + strandat 1584.310 kb on - strand, within MMP_RS08435at 1584.324 kb on - strand, within MMP_RS08435at 1584.422 kb on - strand, within MMP_RS08435at 1584.481 kb on + strand, within MMP_RS08435at 1584.593 kb on + strandat 1584.614 kb on - strandat 1584.714 kb on - strand, within MMP_RS08440at 1584.715 kb on + strand, within MMP_RS08440at 1584.815 kb on - strand, within MMP_RS08440at 1584.816 kb on + strand, within MMP_RS08440at 1584.948 kb on + strand, within MMP_RS08440at 1585.063 kb on - strandat 1585.453 kb on + strand, within MMP_RS08445at 1585.453 kb on + strand, within MMP_RS08445at 1585.470 kb on + strand, within MMP_RS08445at 1585.699 kb on - strand, within MMP_RS08445at 1585.704 kb on + strand, within MMP_RS08445at 1585.709 kb on + strand, within MMP_RS08445

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,583,967 - +0.2
1,583,973 - +0.5
1,583,974 + +0.7
1,584,034 + +1.1
1,584,036 - +1.0
1,584,037 + +0.8
1,584,037 + +0.9
1,584,055 - -5.6
1,584,058 - -5.2
1,584,060 - -6.4
1,584,068 + -1.2
1,584,310 - MMP_RS08435 0.39 -4.6
1,584,324 - MMP_RS08435 0.42 -4.5
1,584,422 - MMP_RS08435 0.60 -4.3
1,584,481 + MMP_RS08435 0.70 -5.4
1,584,593 + -4.2
1,584,614 - -5.3
1,584,714 - MMP_RS08440 0.16 -1.4
1,584,715 + MMP_RS08440 0.16 -4.5
1,584,815 - MMP_RS08440 0.42 -4.6
1,584,816 + MMP_RS08440 0.42 -5.4
1,584,948 + MMP_RS08440 0.76 -5.7
1,585,063 - -3.9
1,585,453 + MMP_RS08445 0.45 -5.5
1,585,453 + MMP_RS08445 0.45 -6.4
1,585,470 + MMP_RS08445 0.47 -4.1
1,585,699 - MMP_RS08445 0.74 -3.5
1,585,704 + MMP_RS08445 0.75 -6.0
1,585,709 + MMP_RS08445 0.75 -4.2

Or see this region's nucleotide sequence