Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08430 and MMP_RS08435 are separated by 76 nucleotides MMP_RS08435 and MMP_RS08440 are separated by 6 nucleotides MMP_RS08440 and MMP_RS08445 are separated by 24 nucleotides MMP_RS08445 and MMP_RS08450 are separated by 21 nucleotides
MMP_RS08430: MMP_RS08430 - HAD family hydrolase, at 1,583,208 to 1,584,014
_RS08430
MMP_RS08435: MMP_RS08435 - Era-like GTP-binding protein, at 1,584,091 to 1,584,645
_RS08435
MMP_RS08440: MMP_RS08440 - cell division protein SepF, at 1,584,652 to 1,585,041
_RS08440
MMP_RS08445: MMP_RS08445 - DUF2099 family protein, at 1,585,066 to 1,585,917
_RS08445
MMP_RS08450: MMP_RS08450 - isopentenyl phosphate kinase family protein, at 1,585,939 to 1,586,712
_RS08450
Position (kb)
1584
1585
1586 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1583.967 kb on - strand at 1583.973 kb on - strand at 1583.974 kb on + strand at 1584.034 kb on + strand at 1584.036 kb on - strand at 1584.037 kb on + strand at 1584.037 kb on + strand at 1584.055 kb on - strand at 1584.058 kb on - strand at 1584.060 kb on - strand at 1584.068 kb on + strand at 1584.310 kb on - strand, within MMP_RS08435 at 1584.324 kb on - strand, within MMP_RS08435 at 1584.422 kb on - strand, within MMP_RS08435 at 1584.481 kb on + strand, within MMP_RS08435 at 1584.593 kb on + strand at 1584.614 kb on - strand at 1584.714 kb on - strand, within MMP_RS08440 at 1584.715 kb on + strand, within MMP_RS08440 at 1584.815 kb on - strand, within MMP_RS08440 at 1584.816 kb on + strand, within MMP_RS08440 at 1584.948 kb on + strand, within MMP_RS08440 at 1585.063 kb on - strand at 1585.453 kb on + strand, within MMP_RS08445 at 1585.453 kb on + strand, within MMP_RS08445 at 1585.470 kb on + strand, within MMP_RS08445 at 1585.699 kb on - strand, within MMP_RS08445 at 1585.704 kb on + strand, within MMP_RS08445 at 1585.709 kb on + strand, within MMP_RS08445
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations remove 1,583,967 - +0.2 1,583,973 - +0.5 1,583,974 + +0.7 1,584,034 + +1.1 1,584,036 - +1.0 1,584,037 + +0.8 1,584,037 + +0.9 1,584,055 - -5.6 1,584,058 - -5.2 1,584,060 - -6.4 1,584,068 + -1.2 1,584,310 - MMP_RS08435 0.39 -4.6 1,584,324 - MMP_RS08435 0.42 -4.5 1,584,422 - MMP_RS08435 0.60 -4.3 1,584,481 + MMP_RS08435 0.70 -5.4 1,584,593 + -4.2 1,584,614 - -5.3 1,584,714 - MMP_RS08440 0.16 -1.4 1,584,715 + MMP_RS08440 0.16 -4.5 1,584,815 - MMP_RS08440 0.42 -4.6 1,584,816 + MMP_RS08440 0.42 -5.4 1,584,948 + MMP_RS08440 0.76 -5.7 1,585,063 - -3.9 1,585,453 + MMP_RS08445 0.45 -5.5 1,585,453 + MMP_RS08445 0.45 -6.4 1,585,470 + MMP_RS08445 0.47 -4.1 1,585,699 - MMP_RS08445 0.74 -3.5 1,585,704 + MMP_RS08445 0.75 -6.0 1,585,709 + MMP_RS08445 0.75 -4.2
Or see this region's nucleotide sequence