Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07955

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07945 and MMP_RS07950 are separated by 38 nucleotidesMMP_RS07950 and MMP_RS07955 are separated by 86 nucleotidesMMP_RS07955 and MMP_RS07960 are separated by 77 nucleotidesMMP_RS07960 and MMP_RS07965 are separated by 21 nucleotides MMP_RS07945: MMP_RS07945 - 50S ribosomal protein L2, at 1,500,992 to 1,501,714 _RS07945 MMP_RS07950: MMP_RS07950 - 30S ribosomal protein S19, at 1,501,753 to 1,502,238 _RS07950 MMP_RS07955: MMP_RS07955 - FumA C-terminus/TtdB family hydratase beta subunit, at 1,502,325 to 1,502,897 _RS07955 MMP_RS07960: MMP_RS07960 - sugar phosphate isomerase/epimerase, at 1,502,975 to 1,503,781 _RS07960 MMP_RS07965: MMP_RS07965 - NADPH-dependent F420 reductase, at 1,503,803 to 1,504,474 _RS07965 Position (kb) 1502 1503Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1502.379 kb on + strandat 1502.385 kb on - strand, within MMP_RS07955at 1502.386 kb on + strand, within MMP_RS07955at 1502.386 kb on + strand, within MMP_RS07955at 1502.390 kb on - strand, within MMP_RS07955at 1502.483 kb on + strand, within MMP_RS07955at 1502.622 kb on + strand, within MMP_RS07955at 1502.635 kb on + strand, within MMP_RS07955at 1502.738 kb on + strand, within MMP_RS07955at 1502.761 kb on + strand, within MMP_RS07955at 1502.793 kb on + strand, within MMP_RS07955at 1502.793 kb on + strand, within MMP_RS07955at 1502.836 kb on + strand, within MMP_RS07955at 1502.925 kb on - strandat 1502.926 kb on + strandat 1502.946 kb on + strandat 1502.951 kb on - strandat 1502.951 kb on - strandat 1503.294 kb on - strand, within MMP_RS07960at 1503.327 kb on - strand, within MMP_RS07960at 1503.360 kb on - strand, within MMP_RS07960at 1503.361 kb on + strand, within MMP_RS07960at 1503.460 kb on - strand, within MMP_RS07960at 1503.494 kb on + strand, within MMP_RS07960at 1503.680 kb on + strand, within MMP_RS07960at 1503.683 kb on + strand, within MMP_RS07960at 1503.686 kb on - strand, within MMP_RS07960at 1503.686 kb on - strand, within MMP_RS07960at 1503.687 kb on + strand, within MMP_RS07960at 1503.759 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,502,379 + +0.8
1,502,385 - MMP_RS07955 0.10 -3.0
1,502,386 + MMP_RS07955 0.11 -1.1
1,502,386 + MMP_RS07955 0.11 -4.3
1,502,390 - MMP_RS07955 0.11 -4.2
1,502,483 + MMP_RS07955 0.28 -4.6
1,502,622 + MMP_RS07955 0.52 -2.9
1,502,635 + MMP_RS07955 0.54 -5.1
1,502,738 + MMP_RS07955 0.72 -4.9
1,502,761 + MMP_RS07955 0.76 -4.5
1,502,793 + MMP_RS07955 0.82 -4.4
1,502,793 + MMP_RS07955 0.82 -4.9
1,502,836 + MMP_RS07955 0.89 -4.5
1,502,925 - -0.1
1,502,926 + -4.2
1,502,946 + +0.1
1,502,951 - -0.4
1,502,951 - -0.6
1,503,294 - MMP_RS07960 0.40 -3.6
1,503,327 - MMP_RS07960 0.44 -5.9
1,503,360 - MMP_RS07960 0.48 -4.6
1,503,361 + MMP_RS07960 0.48 -3.8
1,503,460 - MMP_RS07960 0.60 -4.6
1,503,494 + MMP_RS07960 0.64 -4.9
1,503,680 + MMP_RS07960 0.87 -3.4
1,503,683 + MMP_RS07960 0.88 -4.0
1,503,686 - MMP_RS07960 0.88 -4.8
1,503,686 - MMP_RS07960 0.88 -3.9
1,503,687 + MMP_RS07960 0.88 -4.2
1,503,759 + -6.3

Or see this region's nucleotide sequence