Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07605

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07600 and MMP_RS07605 are separated by 21 nucleotidesMMP_RS07605 and MMP_RS07610 are separated by 113 nucleotides MMP_RS07600: MMP_RS07600 - Ni-sirohydrochlorin a c-diamide synthase, at 1,438,364 to 1,439,708 _RS07600 MMP_RS07605: MMP_RS07605 - diadenylate cyclase, at 1,439,730 to 1,440,662 _RS07605 MMP_RS07610: MMP_RS07610 - homoaconitase large subunit, at 1,440,776 to 1,442,032 _RS07610 Position (kb) 1439 1440 1441Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1439.154 kb on - strand, within MMP_RS07600at 1439.180 kb on + strand, within MMP_RS07600at 1439.487 kb on + strand, within MMP_RS07600at 1439.545 kb on - strand, within MMP_RS07600at 1439.574 kb on + strandat 1439.601 kb on + strandat 1439.638 kb on - strandat 1439.639 kb on + strandat 1439.733 kb on + strandat 1439.987 kb on - strand, within MMP_RS07605at 1439.988 kb on + strand, within MMP_RS07605at 1440.123 kb on + strand, within MMP_RS07605at 1440.160 kb on + strand, within MMP_RS07605at 1440.692 kb on - strandat 1440.693 kb on + strandat 1440.704 kb on + strandat 1440.710 kb on + strandat 1440.725 kb on + strandat 1440.729 kb on - strandat 1440.730 kb on + strandat 1440.749 kb on - strandat 1440.749 kb on - strandat 1440.749 kb on - strandat 1440.749 kb on - strandat 1440.750 kb on + strandat 1440.750 kb on + strandat 1440.750 kb on + strandat 1440.750 kb on + strandat 1441.005 kb on - strandat 1441.335 kb on + strandat 1441.456 kb on - strandat 1441.456 kb on - strandat 1441.462 kb on - strandat 1441.467 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,439,154 - MMP_RS07600 0.59 -4.9
1,439,180 + MMP_RS07600 0.61 -5.1
1,439,487 + MMP_RS07600 0.83 -5.1
1,439,545 - MMP_RS07600 0.88 -5.6
1,439,574 + -4.3
1,439,601 + -4.9
1,439,638 - -5.4
1,439,639 + -4.0
1,439,733 + -4.8
1,439,987 - MMP_RS07605 0.28 -5.6
1,439,988 + MMP_RS07605 0.28 -6.3
1,440,123 + MMP_RS07605 0.42 -5.2
1,440,160 + MMP_RS07605 0.46 -5.5
1,440,692 - +0.3
1,440,693 + +0.6
1,440,704 + +0.1
1,440,710 + +0.5
1,440,725 + -1.3
1,440,729 - -4.7
1,440,730 + -2.1
1,440,749 - -7.0
1,440,749 - -4.3
1,440,749 - -3.7
1,440,749 - -6.8
1,440,750 + -1.6
1,440,750 + +1.1
1,440,750 + -3.1
1,440,750 + +0.1
1,441,005 - -6.1
1,441,335 + -5.9
1,441,456 - -4.1
1,441,456 - -4.7
1,441,462 - -4.0
1,441,467 + -4.2

Or see this region's nucleotide sequence