Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07425

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07415 and MMP_RS07420 are separated by 110 nucleotidesMMP_RS07420 and MMP_RS07425 are separated by 195 nucleotidesMMP_RS07425 and MMP_RS07430 are separated by 10 nucleotidesMMP_RS07430 and MMP_RS07435 are separated by 19 nucleotides MMP_RS07415: MMP_RS07415 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 1,412,750 to 1,413,439 _RS07415 MMP_RS07420: MMP_RS07420 - metalloregulator ArsR/SmtB family transcription factor, at 1,413,550 to 1,413,837 _RS07420 MMP_RS07425: MMP_RS07425 - GTP-binding protein, at 1,414,033 to 1,415,142 _RS07425 MMP_RS07430: MMP_RS07430 - type II methionyl aminopeptidase, at 1,415,153 to 1,416,040 _RS07430 MMP_RS07435: MMP_RS07435 - GMP synthase subunit A, at 1,416,060 to 1,416,629 _RS07435 Position (kb) 1414 1415 1416Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1413.055 kb on - strand, within MMP_RS07415at 1413.067 kb on + strand, within MMP_RS07415at 1413.073 kb on + strand, within MMP_RS07415at 1413.195 kb on + strand, within MMP_RS07415at 1413.297 kb on - strand, within MMP_RS07415at 1413.365 kb on + strand, within MMP_RS07415at 1413.365 kb on + strand, within MMP_RS07415at 1413.366 kb on - strand, within MMP_RS07415at 1413.378 kb on - strandat 1413.379 kb on + strandat 1413.379 kb on + strandat 1413.445 kb on + strandat 1413.475 kb on - strandat 1413.526 kb on + strandat 1413.527 kb on - strandat 1413.557 kb on - strandat 1413.571 kb on - strandat 1413.615 kb on - strand, within MMP_RS07420at 1413.616 kb on + strand, within MMP_RS07420at 1413.639 kb on + strand, within MMP_RS07420at 1413.654 kb on - strand, within MMP_RS07420at 1413.775 kb on - strand, within MMP_RS07420at 1413.778 kb on - strand, within MMP_RS07420at 1413.778 kb on - strand, within MMP_RS07420at 1413.779 kb on + strand, within MMP_RS07420at 1413.779 kb on + strand, within MMP_RS07420at 1413.785 kb on - strand, within MMP_RS07420at 1413.797 kb on - strand, within MMP_RS07420at 1413.810 kb on + strandat 1413.813 kb on - strandat 1413.813 kb on - strandat 1413.813 kb on - strandat 1413.814 kb on + strandat 1413.814 kb on + strandat 1413.814 kb on + strandat 1413.814 kb on + strandat 1413.814 kb on + strandat 1413.817 kb on + strandat 1413.875 kb on - strandat 1413.877 kb on - strandat 1413.877 kb on - strandat 1413.877 kb on - strandat 1413.896 kb on - strandat 1413.897 kb on + strandat 1413.897 kb on + strandat 1413.898 kb on - strandat 1413.898 kb on - strandat 1413.899 kb on + strandat 1413.919 kb on + strandat 1414.074 kb on + strandat 1414.076 kb on - strandat 1414.089 kb on - strandat 1414.089 kb on - strandat 1414.090 kb on + strandat 1414.138 kb on + strandat 1414.279 kb on + strand, within MMP_RS07425at 1414.451 kb on - strand, within MMP_RS07425at 1414.452 kb on + strand, within MMP_RS07425at 1414.633 kb on + strand, within MMP_RS07425at 1414.683 kb on + strand, within MMP_RS07425at 1414.685 kb on - strand, within MMP_RS07425at 1414.836 kb on + strand, within MMP_RS07425at 1414.906 kb on + strand, within MMP_RS07425at 1414.958 kb on - strand, within MMP_RS07425at 1414.963 kb on + strand, within MMP_RS07425at 1414.996 kb on + strand, within MMP_RS07425at 1415.110 kb on + strandat 1415.112 kb on + strandat 1415.515 kb on + strandat 1415.543 kb on + strandat 1415.652 kb on - strandat 1415.652 kb on - strandat 1415.766 kb on - strandat 1415.771 kb on + strandat 1415.824 kb on + strandat 1415.853 kb on + strandat 1415.996 kb on + strandat 1416.120 kb on - strand, within MMP_RS07435at 1416.130 kb on - strand, within MMP_RS07435

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,413,055 - MMP_RS07415 0.44 -3.3
1,413,067 + MMP_RS07415 0.46 -3.8
1,413,073 + MMP_RS07415 0.47 -3.8
1,413,195 + MMP_RS07415 0.64 -0.7
1,413,297 - MMP_RS07415 0.79 -1.1
1,413,365 + MMP_RS07415 0.89 -4.7
1,413,365 + MMP_RS07415 0.89 -3.0
1,413,366 - MMP_RS07415 0.89 -2.7
1,413,378 - -2.3
1,413,379 + -2.1
1,413,379 + -3.1
1,413,445 + +1.0
1,413,475 - +1.3
1,413,526 + -4.6
1,413,527 - -3.8
1,413,557 - -5.4
1,413,571 - -2.8
1,413,615 - MMP_RS07420 0.23 -3.8
1,413,616 + MMP_RS07420 0.23 -2.7
1,413,639 + MMP_RS07420 0.31 -3.3
1,413,654 - MMP_RS07420 0.36 -5.3
1,413,775 - MMP_RS07420 0.78 -2.8
1,413,778 - MMP_RS07420 0.79 -2.7
1,413,778 - MMP_RS07420 0.79 -2.6
1,413,779 + MMP_RS07420 0.80 -3.1
1,413,779 + MMP_RS07420 0.80 -2.1
1,413,785 - MMP_RS07420 0.82 -0.5
1,413,797 - MMP_RS07420 0.86 +0.2
1,413,810 + +0.1
1,413,813 - +0.0
1,413,813 - -0.1
1,413,813 - -0.5
1,413,814 + -0.6
1,413,814 + -0.5
1,413,814 + -0.5
1,413,814 + -0.2
1,413,814 + -0.4
1,413,817 + +0.1
1,413,875 - +1.3
1,413,877 - +0.4
1,413,877 - +0.2
1,413,877 - +0.6
1,413,896 - -4.5
1,413,897 + -4.4
1,413,897 + -4.3
1,413,898 - -4.9
1,413,898 - -3.7
1,413,899 + -3.7
1,413,919 + -4.6
1,414,074 + -3.7
1,414,076 - -4.7
1,414,089 - -5.4
1,414,089 - -4.1
1,414,090 + -3.5
1,414,138 + -4.2
1,414,279 + MMP_RS07425 0.22 -4.5
1,414,451 - MMP_RS07425 0.38 -4.2
1,414,452 + MMP_RS07425 0.38 -3.9
1,414,633 + MMP_RS07425 0.54 -3.6
1,414,683 + MMP_RS07425 0.59 -3.4
1,414,685 - MMP_RS07425 0.59 -4.5
1,414,836 + MMP_RS07425 0.72 -2.0
1,414,906 + MMP_RS07425 0.79 -2.4
1,414,958 - MMP_RS07425 0.83 -4.5
1,414,963 + MMP_RS07425 0.84 -5.3
1,414,996 + MMP_RS07425 0.87 -3.8
1,415,110 + -3.4
1,415,112 + -3.0
1,415,515 + -3.8
1,415,543 + -4.3
1,415,652 - -5.1
1,415,652 - -3.5
1,415,766 - -4.7
1,415,771 + -2.9
1,415,824 + -3.8
1,415,853 + -4.0
1,415,996 + -5.2
1,416,120 - MMP_RS07435 0.11 -4.2
1,416,130 - MMP_RS07435 0.12 -3.8

Or see this region's nucleotide sequence