Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07065 and MMP_RS07070 are separated by 48 nucleotides MMP_RS07070 and MMP_RS07075 are separated by 286 nucleotides MMP_RS07075 and MMP_RS07080 are separated by 62 nucleotides
MMP_RS07065: MMP_RS07065 - translation elongation factor EF-1 subunit alpha, at 1,351,135 to 1,352,421
_RS07065
MMP_RS07070: MMP_RS07070 - 30S ribosomal protein S10, at 1,352,470 to 1,352,778
_RS07070
MMP_RS07075: MMP_RS07075 - phosphomannomutase/phosphoglucomutase, at 1,353,065 to 1,354,378
_RS07075
MMP_RS07080: MMP_RS07080 - formate--phosphoribosylaminoimidazolecarboxamide ligase, at 1,354,441 to 1,355,526
_RS07080
Position (kb)
1353
1354
1355 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1352.467 kb on + strand at 1352.564 kb on - strand at 1352.889 kb on + strand at 1352.965 kb on + strand at 1352.970 kb on + strand at 1352.974 kb on - strand at 1353.012 kb on - strand at 1353.016 kb on - strand at 1353.016 kb on - strand at 1353.017 kb on + strand at 1353.019 kb on - strand at 1353.021 kb on - strand at 1353.061 kb on - strand at 1353.081 kb on + strand at 1353.221 kb on + strand, within MMP_RS07075 at 1353.580 kb on - strand, within MMP_RS07075 at 1353.603 kb on - strand, within MMP_RS07075 at 1353.707 kb on + strand, within MMP_RS07075 at 1353.817 kb on + strand, within MMP_RS07075 at 1353.886 kb on - strand, within MMP_RS07075 at 1353.951 kb on + strand, within MMP_RS07075 at 1353.951 kb on + strand, within MMP_RS07075 at 1354.150 kb on + strand, within MMP_RS07075 at 1354.273 kb on - strand at 1354.273 kb on - strand at 1354.357 kb on + strand at 1354.366 kb on + strand at 1354.369 kb on - strand at 1354.438 kb on + strand at 1354.447 kb on - strand at 1354.449 kb on - strand at 1354.450 kb on + strand at 1354.450 kb on + strand at 1354.604 kb on + strand at 1354.669 kb on - strand at 1354.693 kb on - strand at 1354.761 kb on - strand at 1354.769 kb on - strand at 1354.769 kb on - strand at 1354.770 kb on + strand at 1354.780 kb on - strand at 1354.780 kb on - strand at 1354.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations remove 1,352,467 + -1.7 1,352,564 - -4.2 1,352,889 + +0.6 1,352,965 + +1.2 1,352,970 + +0.6 1,352,974 - +0.8 1,353,012 - -1.1 1,353,016 - -5.7 1,353,016 - -4.3 1,353,017 + -2.8 1,353,019 - -5.0 1,353,021 - -3.7 1,353,061 - -6.7 1,353,081 + -5.4 1,353,221 + MMP_RS07075 0.12 -6.3 1,353,580 - MMP_RS07075 0.39 -1.6 1,353,603 - MMP_RS07075 0.41 -2.9 1,353,707 + MMP_RS07075 0.49 -5.7 1,353,817 + MMP_RS07075 0.57 -5.6 1,353,886 - MMP_RS07075 0.62 -6.2 1,353,951 + MMP_RS07075 0.67 -1.6 1,353,951 + MMP_RS07075 0.67 -6.8 1,354,150 + MMP_RS07075 0.83 -5.2 1,354,273 - -1.6 1,354,273 - -3.7 1,354,357 + +0.6 1,354,366 + +0.5 1,354,369 - +0.4 1,354,438 + +0.5 1,354,447 - -4.2 1,354,449 - -4.6 1,354,450 + -4.7 1,354,450 + -4.2 1,354,604 + -3.6 1,354,669 - -4.3 1,354,693 - -4.7 1,354,761 - -3.9 1,354,769 - -2.7 1,354,769 - -4.7 1,354,770 + -4.0 1,354,780 - -4.4 1,354,780 - -4.0 1,354,889 - -5.5
Or see this region's nucleotide sequence