Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06980

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06975 and MMP_RS06980 are separated by 90 nucleotidesMMP_RS06980 and MMP_RS06985 are separated by 138 nucleotides MMP_RS06975: MMP_RS06975 - sulfide-dependent adenosine diphosphate thiazole synthase, at 1,331,721 to 1,332,509 _RS06975 MMP_RS06980: MMP_RS06980 - tRNA 2-thiocytidine biosynthesis TtcA family protein, at 1,332,600 to 1,333,574 _RS06980 MMP_RS06985: MMP_RS06985 - tRNA 4-thiouridine(8) synthase ThiI, at 1,333,713 to 1,334,864 _RS06985 Position (kb) 1332 1333 1334Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 1331.600 kb on + strandat 1331.666 kb on - strandat 1331.708 kb on + strandat 1331.776 kb on - strandat 1331.876 kb on - strand, within MMP_RS06975at 1332.005 kb on + strand, within MMP_RS06975at 1332.005 kb on + strand, within MMP_RS06975at 1332.545 kb on + strandat 1332.613 kb on - strandat 1332.613 kb on - strandat 1332.725 kb on - strand, within MMP_RS06980at 1332.726 kb on + strand, within MMP_RS06980at 1332.761 kb on + strand, within MMP_RS06980at 1332.873 kb on - strand, within MMP_RS06980at 1332.874 kb on + strand, within MMP_RS06980at 1332.916 kb on + strand, within MMP_RS06980at 1332.919 kb on + strand, within MMP_RS06980at 1332.920 kb on - strand, within MMP_RS06980at 1332.934 kb on + strand, within MMP_RS06980at 1332.947 kb on - strand, within MMP_RS06980at 1332.947 kb on - strand, within MMP_RS06980at 1333.237 kb on + strand, within MMP_RS06980at 1333.362 kb on - strand, within MMP_RS06980at 1333.506 kb on + strandat 1333.528 kb on + strandat 1333.532 kb on + strandat 1333.563 kb on - strandat 1333.564 kb on + strandat 1333.590 kb on - strandat 1333.602 kb on + strandat 1333.602 kb on + strandat 1333.602 kb on + strandat 1333.602 kb on + strandat 1333.605 kb on - strandat 1333.605 kb on - strandat 1333.606 kb on + strandat 1333.606 kb on + strandat 1333.606 kb on + strandat 1333.608 kb on + strandat 1333.615 kb on - strandat 1333.615 kb on - strandat 1333.615 kb on - strandat 1333.617 kb on - strandat 1333.618 kb on + strandat 1333.619 kb on - strandat 1333.619 kb on - strandat 1333.620 kb on + strandat 1333.620 kb on + strandat 1333.627 kb on + strandat 1333.645 kb on + strandat 1333.649 kb on + strandat 1333.655 kb on - strandat 1333.656 kb on + strandat 1333.656 kb on + strandat 1333.660 kb on + strandat 1333.660 kb on + strandat 1333.668 kb on - strandat 1333.679 kb on + strandat 1333.679 kb on + strandat 1333.948 kb on + strandat 1334.046 kb on + strandat 1334.330 kb on - strandat 1334.345 kb on + strandat 1334.434 kb on + strandat 1334.434 kb on + strandat 1334.445 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,331,600 + +0.0
1,331,666 - +1.0
1,331,708 + +0.1
1,331,776 - +1.5
1,331,876 - MMP_RS06975 0.20 +1.3
1,332,005 + MMP_RS06975 0.36 +1.4
1,332,005 + MMP_RS06975 0.36 +0.9
1,332,545 + +1.7
1,332,613 - +1.5
1,332,613 - +0.9
1,332,725 - MMP_RS06980 0.13 -5.0
1,332,726 + MMP_RS06980 0.13 -4.7
1,332,761 + MMP_RS06980 0.17 -5.8
1,332,873 - MMP_RS06980 0.28 -6.2
1,332,874 + MMP_RS06980 0.28 -5.7
1,332,916 + MMP_RS06980 0.32 -4.8
1,332,919 + MMP_RS06980 0.33 -6.3
1,332,920 - MMP_RS06980 0.33 -7.4
1,332,934 + MMP_RS06980 0.34 -4.9
1,332,947 - MMP_RS06980 0.36 -5.9
1,332,947 - MMP_RS06980 0.36 -6.5
1,333,237 + MMP_RS06980 0.65 -4.8
1,333,362 - MMP_RS06980 0.78 -7.5
1,333,506 + -5.9
1,333,528 + -5.8
1,333,532 + -5.7
1,333,563 - -6.1
1,333,564 + -3.9
1,333,590 - +0.2
1,333,602 + -0.2
1,333,602 + -1.0
1,333,602 + +0.2
1,333,602 + +0.2
1,333,605 - +0.2
1,333,605 - -0.1
1,333,606 + -0.3
1,333,606 + -0.4
1,333,606 + -0.8
1,333,608 + +0.0
1,333,615 - +0.4
1,333,615 - -0.1
1,333,615 - +0.6
1,333,617 - +0.2
1,333,618 + +0.6
1,333,619 - +2.4
1,333,619 - +0.6
1,333,620 + -0.3
1,333,620 + +0.1
1,333,627 + -0.3
1,333,645 + -0.3
1,333,649 + -0.1
1,333,655 - -3.0
1,333,656 + -0.3
1,333,656 + -0.2
1,333,660 + +0.5
1,333,660 + -0.2
1,333,668 - -4.3
1,333,679 + -1.4
1,333,679 + -0.9
1,333,948 + -3.8
1,334,046 + -4.2
1,334,330 - -4.0
1,334,345 + -3.2
1,334,434 + -4.0
1,334,434 + -4.7
1,334,445 + -5.4

Or see this region's nucleotide sequence