Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06685 and MMP_RS06695 are separated by 301 nucleotides MMP_RS06695 and MMP_RS06700 are separated by 20 nucleotides MMP_RS06700 and MMP_RS06705 are separated by 37 nucleotides
MMP_RS06685: MMP_RS06685 - formate dehydrogenase H subunit alpha selenocysteine-containing, at 1,283,821 to 1,285,845
_RS06685
MMP_RS06695: MMP_RS06695 - carbonic anhydrase, at 1,286,147 to 1,286,599
_RS06695
MMP_RS06700: MMP_RS06700 - hypothetical protein, at 1,286,620 to 1,287,153
_RS06700
MMP_RS06705: MMP_RS06705 - formate/nitrite transporter family protein, at 1,287,191 to 1,288,015
_RS06705
Position (kb)
1286
1287
1288 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 1285.669 kb on + strand at 1285.697 kb on - strand at 1285.698 kb on + strand at 1285.702 kb on + strand at 1285.824 kb on - strand at 1285.863 kb on + strand at 1285.871 kb on + strand at 1285.894 kb on - strand at 1285.952 kb on + strand at 1285.955 kb on - strand at 1285.955 kb on - strand at 1285.976 kb on + strand at 1285.988 kb on - strand at 1286.009 kb on - strand at 1286.010 kb on + strand at 1286.011 kb on - strand at 1286.011 kb on - strand at 1286.011 kb on - strand at 1286.012 kb on + strand at 1286.012 kb on + strand at 1286.015 kb on - strand at 1286.015 kb on - strand at 1286.016 kb on + strand at 1286.016 kb on + strand at 1286.019 kb on - strand at 1286.019 kb on - strand at 1286.019 kb on - strand at 1286.021 kb on - strand at 1286.025 kb on + strand at 1286.029 kb on - strand at 1286.063 kb on + strand at 1286.080 kb on + strand at 1286.090 kb on - strand at 1286.178 kb on + strand at 1286.186 kb on - strand at 1286.603 kb on + strand at 1286.725 kb on - strand, within MMP_RS06700 at 1286.726 kb on + strand, within MMP_RS06700 at 1286.726 kb on + strand, within MMP_RS06700 at 1286.831 kb on - strand, within MMP_RS06700 at 1286.831 kb on - strand, within MMP_RS06700 at 1286.832 kb on + strand, within MMP_RS06700 at 1286.833 kb on - strand, within MMP_RS06700 at 1286.836 kb on - strand, within MMP_RS06700 at 1286.899 kb on - strand, within MMP_RS06700 at 1286.901 kb on - strand, within MMP_RS06700 at 1286.902 kb on + strand, within MMP_RS06700 at 1286.902 kb on + strand, within MMP_RS06700 at 1286.923 kb on - strand, within MMP_RS06700 at 1286.923 kb on - strand, within MMP_RS06700 at 1286.923 kb on - strand, within MMP_RS06700 at 1286.923 kb on - strand, within MMP_RS06700 at 1286.923 kb on - strand, within MMP_RS06700 at 1286.924 kb on + strand, within MMP_RS06700 at 1286.993 kb on + strand, within MMP_RS06700 at 1286.998 kb on - strand, within MMP_RS06700 at 1287.019 kb on - strand, within MMP_RS06700 at 1287.022 kb on - strand, within MMP_RS06700 at 1287.023 kb on + strand, within MMP_RS06700 at 1287.048 kb on + strand, within MMP_RS06700 at 1287.048 kb on + strand, within MMP_RS06700 at 1287.146 kb on + strand at 1287.156 kb on - strand at 1287.236 kb on - strand at 1287.425 kb on + strand, within MMP_RS06705 at 1287.446 kb on - strand, within MMP_RS06705 at 1287.447 kb on + strand, within MMP_RS06705 at 1287.529 kb on + strand, within MMP_RS06705 at 1287.645 kb on - strand, within MMP_RS06705 at 1287.751 kb on - strand, within MMP_RS06705 at 1287.829 kb on - strand, within MMP_RS06705 at 1287.904 kb on + strand, within MMP_RS06705 at 1287.904 kb on + strand, within MMP_RS06705 at 1288.019 kb on + strand at 1288.022 kb on + strand at 1288.067 kb on + strand at 1288.070 kb on - strand at 1288.070 kb on - strand at 1288.071 kb on + strand at 1288.071 kb on + strand at 1288.074 kb on - strand at 1288.075 kb on + strand at 1288.075 kb on + strand at 1288.075 kb on + strand at 1288.077 kb on - strand at 1288.078 kb on + strand at 1288.078 kb on + strand at 1288.079 kb on - strand at 1288.080 kb on + strand at 1288.080 kb on + strand at 1288.080 kb on + strand at 1288.081 kb on - strand at 1288.081 kb on - strand at 1288.082 kb on + strand at 1288.082 kb on + strand at 1288.082 kb on + strand at 1288.082 kb on + strand at 1288.084 kb on - strand at 1288.110 kb on - strand at 1288.121 kb on - strand at 1288.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations remove 1,285,669 + -6.1 1,285,697 - -7.9 1,285,698 + -6.2 1,285,702 + -6.9 1,285,824 - -6.9 1,285,863 + -6.9 1,285,871 + -5.7 1,285,894 - -6.1 1,285,952 + -4.9 1,285,955 - -6.0 1,285,955 - -6.7 1,285,976 + -6.4 1,285,988 - -7.3 1,286,009 - -3.1 1,286,010 + -4.6 1,286,011 - -6.2 1,286,011 - -4.0 1,286,011 - -4.1 1,286,012 + -6.9 1,286,012 + -7.4 1,286,015 - -3.0 1,286,015 - -4.0 1,286,016 + -6.3 1,286,016 + -7.2 1,286,019 - -4.4 1,286,019 - -5.1 1,286,019 - -4.3 1,286,021 - -3.4 1,286,025 + -5.5 1,286,029 - -5.7 1,286,063 + -4.2 1,286,080 + -3.7 1,286,090 - -4.0 1,286,178 + -5.1 1,286,186 - -5.3 1,286,603 + -3.5 1,286,725 - MMP_RS06700 0.20 -7.4 1,286,726 + MMP_RS06700 0.20 -7.0 1,286,726 + MMP_RS06700 0.20 -5.5 1,286,831 - MMP_RS06700 0.40 -6.2 1,286,831 - MMP_RS06700 0.40 -6.8 1,286,832 + MMP_RS06700 0.40 -5.8 1,286,833 - MMP_RS06700 0.40 -5.0 1,286,836 - MMP_RS06700 0.40 -7.4 1,286,899 - MMP_RS06700 0.52 -5.5 1,286,901 - MMP_RS06700 0.53 -7.4 1,286,902 + MMP_RS06700 0.53 -6.0 1,286,902 + MMP_RS06700 0.53 -7.3 1,286,923 - MMP_RS06700 0.57 -6.8 1,286,923 - MMP_RS06700 0.57 -6.7 1,286,923 - MMP_RS06700 0.57 -6.5 1,286,923 - MMP_RS06700 0.57 -8.0 1,286,923 - MMP_RS06700 0.57 -6.4 1,286,924 + MMP_RS06700 0.57 -5.7 1,286,993 + MMP_RS06700 0.70 -7.6 1,286,998 - MMP_RS06700 0.71 -5.7 1,287,019 - MMP_RS06700 0.75 -7.8 1,287,022 - MMP_RS06700 0.75 -7.5 1,287,023 + MMP_RS06700 0.75 -6.4 1,287,048 + MMP_RS06700 0.80 -6.2 1,287,048 + MMP_RS06700 0.80 -5.7 1,287,146 + -8.0 1,287,156 - -5.8 1,287,236 - -6.0 1,287,425 + MMP_RS06705 0.28 -6.8 1,287,446 - MMP_RS06705 0.31 -4.7 1,287,447 + MMP_RS06705 0.31 -5.4 1,287,529 + MMP_RS06705 0.41 -6.3 1,287,645 - MMP_RS06705 0.55 -6.3 1,287,751 - MMP_RS06705 0.68 -4.5 1,287,829 - MMP_RS06705 0.77 -5.1 1,287,904 + MMP_RS06705 0.86 -4.6 1,287,904 + MMP_RS06705 0.86 -5.8 1,288,019 + -5.9 1,288,022 + -5.2 1,288,067 + -4.6 1,288,070 - -4.6 1,288,070 - -4.8 1,288,071 + -5.1 1,288,071 + -3.5 1,288,074 - -4.0 1,288,075 + -3.8 1,288,075 + -4.2 1,288,075 + -3.6 1,288,077 - -5.4 1,288,078 + -5.0 1,288,078 + -6.4 1,288,079 - -5.9 1,288,080 + -5.9 1,288,080 + -3.3 1,288,080 + -6.5 1,288,081 - -6.1 1,288,081 - -6.7 1,288,082 + -3.4 1,288,082 + -3.9 1,288,082 + -3.8 1,288,082 + -6.5 1,288,084 - -3.9 1,288,110 - -1.4 1,288,121 - +0.5 1,288,129 - -0.9
Or see this region's nucleotide sequence