Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06700

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06685 and MMP_RS06695 are separated by 301 nucleotidesMMP_RS06695 and MMP_RS06700 are separated by 20 nucleotidesMMP_RS06700 and MMP_RS06705 are separated by 37 nucleotides MMP_RS06685: MMP_RS06685 - formate dehydrogenase H subunit alpha selenocysteine-containing, at 1,283,821 to 1,285,845 _RS06685 MMP_RS06695: MMP_RS06695 - carbonic anhydrase, at 1,286,147 to 1,286,599 _RS06695 MMP_RS06700: MMP_RS06700 - hypothetical protein, at 1,286,620 to 1,287,153 _RS06700 MMP_RS06705: MMP_RS06705 - formate/nitrite transporter family protein, at 1,287,191 to 1,288,015 _RS06705 Position (kb) 1286 1287 1288Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 1285.669 kb on + strandat 1285.697 kb on - strandat 1285.698 kb on + strandat 1285.702 kb on + strandat 1285.824 kb on - strandat 1285.863 kb on + strandat 1285.871 kb on + strandat 1285.894 kb on - strandat 1285.952 kb on + strandat 1285.955 kb on - strandat 1285.955 kb on - strandat 1285.976 kb on + strandat 1285.988 kb on - strandat 1286.009 kb on - strandat 1286.010 kb on + strandat 1286.011 kb on - strandat 1286.011 kb on - strandat 1286.011 kb on - strandat 1286.012 kb on + strandat 1286.012 kb on + strandat 1286.015 kb on - strandat 1286.015 kb on - strandat 1286.016 kb on + strandat 1286.016 kb on + strandat 1286.019 kb on - strandat 1286.019 kb on - strandat 1286.019 kb on - strandat 1286.021 kb on - strandat 1286.025 kb on + strandat 1286.029 kb on - strandat 1286.063 kb on + strandat 1286.080 kb on + strandat 1286.090 kb on - strandat 1286.178 kb on + strandat 1286.186 kb on - strandat 1286.603 kb on + strandat 1286.725 kb on - strand, within MMP_RS06700at 1286.726 kb on + strand, within MMP_RS06700at 1286.726 kb on + strand, within MMP_RS06700at 1286.831 kb on - strand, within MMP_RS06700at 1286.831 kb on - strand, within MMP_RS06700at 1286.832 kb on + strand, within MMP_RS06700at 1286.833 kb on - strand, within MMP_RS06700at 1286.836 kb on - strand, within MMP_RS06700at 1286.899 kb on - strand, within MMP_RS06700at 1286.901 kb on - strand, within MMP_RS06700at 1286.902 kb on + strand, within MMP_RS06700at 1286.902 kb on + strand, within MMP_RS06700at 1286.923 kb on - strand, within MMP_RS06700at 1286.923 kb on - strand, within MMP_RS06700at 1286.923 kb on - strand, within MMP_RS06700at 1286.923 kb on - strand, within MMP_RS06700at 1286.923 kb on - strand, within MMP_RS06700at 1286.924 kb on + strand, within MMP_RS06700at 1286.993 kb on + strand, within MMP_RS06700at 1286.998 kb on - strand, within MMP_RS06700at 1287.019 kb on - strand, within MMP_RS06700at 1287.022 kb on - strand, within MMP_RS06700at 1287.023 kb on + strand, within MMP_RS06700at 1287.048 kb on + strand, within MMP_RS06700at 1287.048 kb on + strand, within MMP_RS06700at 1287.146 kb on + strandat 1287.156 kb on - strandat 1287.236 kb on - strandat 1287.425 kb on + strand, within MMP_RS06705at 1287.446 kb on - strand, within MMP_RS06705at 1287.447 kb on + strand, within MMP_RS06705at 1287.529 kb on + strand, within MMP_RS06705at 1287.645 kb on - strand, within MMP_RS06705at 1287.751 kb on - strand, within MMP_RS06705at 1287.829 kb on - strand, within MMP_RS06705at 1287.904 kb on + strand, within MMP_RS06705at 1287.904 kb on + strand, within MMP_RS06705at 1288.019 kb on + strandat 1288.022 kb on + strandat 1288.067 kb on + strandat 1288.070 kb on - strandat 1288.070 kb on - strandat 1288.071 kb on + strandat 1288.071 kb on + strandat 1288.074 kb on - strandat 1288.075 kb on + strandat 1288.075 kb on + strandat 1288.075 kb on + strandat 1288.077 kb on - strandat 1288.078 kb on + strandat 1288.078 kb on + strandat 1288.079 kb on - strandat 1288.080 kb on + strandat 1288.080 kb on + strandat 1288.080 kb on + strandat 1288.081 kb on - strandat 1288.081 kb on - strandat 1288.082 kb on + strandat 1288.082 kb on + strandat 1288.082 kb on + strandat 1288.082 kb on + strandat 1288.084 kb on - strandat 1288.110 kb on - strandat 1288.121 kb on - strandat 1288.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,285,669 + -6.1
1,285,697 - -7.9
1,285,698 + -6.2
1,285,702 + -6.9
1,285,824 - -6.9
1,285,863 + -6.9
1,285,871 + -5.7
1,285,894 - -6.1
1,285,952 + -4.9
1,285,955 - -6.0
1,285,955 - -6.7
1,285,976 + -6.4
1,285,988 - -7.3
1,286,009 - -3.1
1,286,010 + -4.6
1,286,011 - -6.2
1,286,011 - -4.0
1,286,011 - -4.1
1,286,012 + -6.9
1,286,012 + -7.4
1,286,015 - -3.0
1,286,015 - -4.0
1,286,016 + -6.3
1,286,016 + -7.2
1,286,019 - -4.4
1,286,019 - -5.1
1,286,019 - -4.3
1,286,021 - -3.4
1,286,025 + -5.5
1,286,029 - -5.7
1,286,063 + -4.2
1,286,080 + -3.7
1,286,090 - -4.0
1,286,178 + -5.1
1,286,186 - -5.3
1,286,603 + -3.5
1,286,725 - MMP_RS06700 0.20 -7.4
1,286,726 + MMP_RS06700 0.20 -7.0
1,286,726 + MMP_RS06700 0.20 -5.5
1,286,831 - MMP_RS06700 0.40 -6.2
1,286,831 - MMP_RS06700 0.40 -6.8
1,286,832 + MMP_RS06700 0.40 -5.8
1,286,833 - MMP_RS06700 0.40 -5.0
1,286,836 - MMP_RS06700 0.40 -7.4
1,286,899 - MMP_RS06700 0.52 -5.5
1,286,901 - MMP_RS06700 0.53 -7.4
1,286,902 + MMP_RS06700 0.53 -6.0
1,286,902 + MMP_RS06700 0.53 -7.3
1,286,923 - MMP_RS06700 0.57 -6.8
1,286,923 - MMP_RS06700 0.57 -6.7
1,286,923 - MMP_RS06700 0.57 -6.5
1,286,923 - MMP_RS06700 0.57 -8.0
1,286,923 - MMP_RS06700 0.57 -6.4
1,286,924 + MMP_RS06700 0.57 -5.7
1,286,993 + MMP_RS06700 0.70 -7.6
1,286,998 - MMP_RS06700 0.71 -5.7
1,287,019 - MMP_RS06700 0.75 -7.8
1,287,022 - MMP_RS06700 0.75 -7.5
1,287,023 + MMP_RS06700 0.75 -6.4
1,287,048 + MMP_RS06700 0.80 -6.2
1,287,048 + MMP_RS06700 0.80 -5.7
1,287,146 + -8.0
1,287,156 - -5.8
1,287,236 - -6.0
1,287,425 + MMP_RS06705 0.28 -6.8
1,287,446 - MMP_RS06705 0.31 -4.7
1,287,447 + MMP_RS06705 0.31 -5.4
1,287,529 + MMP_RS06705 0.41 -6.3
1,287,645 - MMP_RS06705 0.55 -6.3
1,287,751 - MMP_RS06705 0.68 -4.5
1,287,829 - MMP_RS06705 0.77 -5.1
1,287,904 + MMP_RS06705 0.86 -4.6
1,287,904 + MMP_RS06705 0.86 -5.8
1,288,019 + -5.9
1,288,022 + -5.2
1,288,067 + -4.6
1,288,070 - -4.6
1,288,070 - -4.8
1,288,071 + -5.1
1,288,071 + -3.5
1,288,074 - -4.0
1,288,075 + -3.8
1,288,075 + -4.2
1,288,075 + -3.6
1,288,077 - -5.4
1,288,078 + -5.0
1,288,078 + -6.4
1,288,079 - -5.9
1,288,080 + -5.9
1,288,080 + -3.3
1,288,080 + -6.5
1,288,081 - -6.1
1,288,081 - -6.7
1,288,082 + -3.4
1,288,082 + -3.9
1,288,082 + -3.8
1,288,082 + -6.5
1,288,084 - -3.9
1,288,110 - -1.4
1,288,121 - +0.5
1,288,129 - -0.9

Or see this region's nucleotide sequence