Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06630

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06625 and MMP_RS06630 are separated by 33 nucleotidesMMP_RS06630 and MMP_RS06635 are separated by 39 nucleotides MMP_RS06625: MMP_RS06625 - DNA primase, at 1,269,354 to 1,270,664 _RS06625 MMP_RS06630: MMP_RS06630 - UPF0058 family protein, at 1,270,698 to 1,270,991 _RS06630 MMP_RS06635: MMP_RS06635 - UbiD family decarboxylase, at 1,271,031 to 1,272,308 _RS06635 Position (kb) 1270 1271Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1269.760 kb on + strand, within MMP_RS06625at 1270.408 kb on - strand, within MMP_RS06625at 1270.409 kb on + strand, within MMP_RS06625at 1270.817 kb on + strand, within MMP_RS06630at 1270.873 kb on - strand, within MMP_RS06630at 1271.352 kb on - strandat 1271.381 kb on - strandat 1271.392 kb on - strandat 1271.508 kb on - strandat 1271.650 kb on - strandat 1271.780 kb on + strandat 1271.885 kb on + strandat 1271.885 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,269,760 + MMP_RS06625 0.31 -4.2
1,270,408 - MMP_RS06625 0.80 -4.6
1,270,409 + MMP_RS06625 0.80 -4.3
1,270,817 + MMP_RS06630 0.40 -4.0
1,270,873 - MMP_RS06630 0.60 -4.7
1,271,352 - -4.8
1,271,381 - -5.1
1,271,392 - -4.1
1,271,508 - -4.2
1,271,650 - -3.8
1,271,780 + -4.5
1,271,885 + -4.0
1,271,885 + -3.6

Or see this region's nucleotide sequence