Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06625

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06610 and MMP_RS06615 are separated by 122 nucleotidesMMP_RS06615 and MMP_RS06620 are separated by 18 nucleotidesMMP_RS06620 and MMP_RS06625 are separated by 233 nucleotidesMMP_RS06625 and MMP_RS06630 are separated by 33 nucleotidesMMP_RS06630 and MMP_RS06635 are separated by 39 nucleotides MMP_RS06610: MMP_RS06610 - DUF2334 domain-containing protein, at 1,268,034 to 1,268,834 _RS06610 MMP_RS06615: MMP_RS06615 - tRNA-Gly, at 1,268,957 to 1,269,029 _RS06615 MMP_RS06620: MMP_RS06620 - tRNA-Gly, at 1,269,048 to 1,269,120 _RS06620 MMP_RS06625: MMP_RS06625 - DNA primase, at 1,269,354 to 1,270,664 _RS06625 MMP_RS06630: MMP_RS06630 - UPF0058 family protein, at 1,270,698 to 1,270,991 _RS06630 MMP_RS06635: MMP_RS06635 - UbiD family decarboxylase, at 1,271,031 to 1,272,308 _RS06635 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1268.415 kb on + strand, within MMP_RS06610at 1268.498 kb on - strand, within MMP_RS06610at 1268.568 kb on + strand, within MMP_RS06610at 1268.661 kb on + strand, within MMP_RS06610at 1268.879 kb on - strandat 1268.890 kb on + strandat 1268.896 kb on + strandat 1268.897 kb on - strandat 1268.897 kb on - strandat 1268.898 kb on + strandat 1268.899 kb on - strandat 1268.899 kb on - strandat 1268.900 kb on + strandat 1269.245 kb on + strandat 1269.248 kb on - strandat 1269.248 kb on - strandat 1269.249 kb on + strandat 1269.249 kb on + strandat 1269.250 kb on - strandat 1269.251 kb on + strandat 1269.253 kb on + strandat 1269.269 kb on + strandat 1269.273 kb on + strandat 1269.273 kb on + strandat 1269.277 kb on + strandat 1269.292 kb on + strandat 1269.378 kb on + strandat 1269.602 kb on + strand, within MMP_RS06625at 1269.760 kb on + strand, within MMP_RS06625at 1270.408 kb on - strand, within MMP_RS06625at 1270.409 kb on + strand, within MMP_RS06625at 1270.817 kb on + strand, within MMP_RS06630at 1270.873 kb on - strand, within MMP_RS06630at 1271.352 kb on - strandat 1271.381 kb on - strandat 1271.392 kb on - strandat 1271.508 kb on - strandat 1271.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,268,415 + MMP_RS06610 0.48 +1.0
1,268,498 - MMP_RS06610 0.58 +0.4
1,268,568 + MMP_RS06610 0.67 -0.2
1,268,661 + MMP_RS06610 0.78 -0.2
1,268,879 - +0.4
1,268,890 + -0.4
1,268,896 + -0.1
1,268,897 - +0.1
1,268,897 - +0.5
1,268,898 + -1.5
1,268,899 - -0.1
1,268,899 - +0.5
1,268,900 + +1.1
1,269,245 + +0.8
1,269,248 - +0.1
1,269,248 - +0.6
1,269,249 + -0.3
1,269,249 + +0.7
1,269,250 - -0.5
1,269,251 + -0.4
1,269,253 + -1.2
1,269,269 + -6.9
1,269,273 + -4.6
1,269,273 + -5.4
1,269,277 + -5.6
1,269,292 + -5.0
1,269,378 + -4.4
1,269,602 + MMP_RS06625 0.19 -5.1
1,269,760 + MMP_RS06625 0.31 -4.2
1,270,408 - MMP_RS06625 0.80 -4.6
1,270,409 + MMP_RS06625 0.80 -4.3
1,270,817 + MMP_RS06630 0.40 -4.0
1,270,873 - MMP_RS06630 0.60 -4.7
1,271,352 - -4.8
1,271,381 - -5.1
1,271,392 - -4.1
1,271,508 - -4.2
1,271,650 - -3.8

Or see this region's nucleotide sequence