Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06575

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06565 and MMP_RS06570 are separated by 22 nucleotidesMMP_RS06570 and MMP_RS06575 are separated by 4 nucleotidesMMP_RS06575 and MMP_RS06580 are separated by 100 nucleotidesMMP_RS06580 and MMP_RS06585 are separated by 71 nucleotidesMMP_RS06585 and MMP_RS06590 are separated by 71 nucleotides MMP_RS06565: MMP_RS06565 - fumarate reductase subunit A, at 1,261,146 to 1,262,765 _RS06565 MMP_RS06570: MMP_RS06570 - DUF190 domain-containing protein, at 1,262,788 to 1,263,117 _RS06570 MMP_RS06575: MMP_RS06575 - fluoride efflux transporter CrcB, at 1,263,122 to 1,263,490 _RS06575 MMP_RS06580: MMP_RS06580 - tRNA-Arg, at 1,263,591 to 1,263,665 _RS06580 MMP_RS06585: MMP_RS06585 - DMT family protein, at 1,263,737 to 1,264,075 _RS06585 MMP_RS06590: MMP_RS06590 - GNAT family N-acetyltransferase, at 1,264,147 to 1,264,653 _RS06590 Position (kb) 1263 1264Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1262.157 kb on + strandat 1262.752 kb on + strandat 1262.830 kb on - strand, within MMP_RS06570at 1262.872 kb on - strand, within MMP_RS06570at 1262.874 kb on - strand, within MMP_RS06570at 1262.894 kb on - strand, within MMP_RS06570at 1263.022 kb on - strand, within MMP_RS06570at 1263.035 kb on + strand, within MMP_RS06570at 1263.216 kb on - strand, within MMP_RS06575at 1263.339 kb on - strand, within MMP_RS06575at 1263.380 kb on - strand, within MMP_RS06575at 1263.382 kb on - strand, within MMP_RS06575at 1263.382 kb on - strand, within MMP_RS06575at 1263.503 kb on - strandat 1263.542 kb on + strandat 1263.543 kb on - strandat 1263.545 kb on - strandat 1263.554 kb on + strandat 1263.739 kb on + strandat 1263.997 kb on + strand, within MMP_RS06585at 1264.065 kb on - strandat 1264.103 kb on + strandat 1264.105 kb on + strandat 1264.106 kb on - strandat 1264.121 kb on - strandat 1264.153 kb on + strandat 1264.155 kb on - strandat 1264.404 kb on - strand, within MMP_RS06590at 1264.417 kb on - strand, within MMP_RS06590at 1264.417 kb on - strand, within MMP_RS06590

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,262,157 + -4.3
1,262,752 + -3.5
1,262,830 - MMP_RS06570 0.13 -3.2
1,262,872 - MMP_RS06570 0.25 -5.1
1,262,874 - MMP_RS06570 0.26 -6.2
1,262,894 - MMP_RS06570 0.32 -4.4
1,263,022 - MMP_RS06570 0.71 -2.4
1,263,035 + MMP_RS06570 0.75 -4.8
1,263,216 - MMP_RS06575 0.25 -1.9
1,263,339 - MMP_RS06575 0.59 -6.3
1,263,380 - MMP_RS06575 0.70 -5.8
1,263,382 - MMP_RS06575 0.70 -5.5
1,263,382 - MMP_RS06575 0.70 -4.6
1,263,503 - -7.0
1,263,542 + -1.6
1,263,543 - -3.9
1,263,545 - -2.3
1,263,554 + -4.1
1,263,739 + -0.2
1,263,997 + MMP_RS06585 0.77 +0.3
1,264,065 - +0.1
1,264,103 + +0.1
1,264,105 + +0.4
1,264,106 - -0.9
1,264,121 - -0.2
1,264,153 + +0.4
1,264,155 - -3.4
1,264,404 - MMP_RS06590 0.51 +0.2
1,264,417 - MMP_RS06590 0.53 -0.4
1,264,417 - MMP_RS06590 0.53 +0.7

Or see this region's nucleotide sequence