Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06130

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06120 and MMP_RS06125 are separated by 142 nucleotidesMMP_RS06125 and MMP_RS06130 are separated by 68 nucleotidesMMP_RS06130 and MMP_RS06135 are separated by 190 nucleotides MMP_RS06120: MMP_RS06120 - UPF0147 family protein, at 1,171,310 to 1,171,585 _RS06120 MMP_RS06125: MMP_RS06125 - ribose-5-phosphate isomerase RpiA, at 1,171,728 to 1,172,447 _RS06125 MMP_RS06130: MMP_RS06130 - peptidylprolyl isomerase, at 1,172,516 to 1,172,968 _RS06130 MMP_RS06135: MMP_RS06135 - methenyltetrahydromethanopterin cyclohydrolase, at 1,173,159 to 1,174,130 _RS06135 Position (kb) 1172 1173Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1171.541 kb on + strand, within MMP_RS06120at 1171.647 kb on - strandat 1171.654 kb on - strandat 1171.654 kb on - strandat 1171.685 kb on + strandat 1171.685 kb on + strandat 1171.710 kb on - strandat 1171.740 kb on - strandat 1171.867 kb on + strandat 1171.928 kb on - strandat 1171.993 kb on + strandat 1172.077 kb on - strandat 1172.083 kb on + strandat 1172.121 kb on - strandat 1172.164 kb on + strandat 1172.220 kb on + strandat 1172.249 kb on - strandat 1172.249 kb on - strandat 1172.250 kb on + strandat 1172.264 kb on - strandat 1172.265 kb on + strandat 1172.436 kb on + strandat 1172.495 kb on + strandat 1172.643 kb on + strand, within MMP_RS06130at 1172.756 kb on - strand, within MMP_RS06130at 1172.844 kb on - strand, within MMP_RS06130at 1172.844 kb on - strand, within MMP_RS06130at 1172.845 kb on + strand, within MMP_RS06130at 1172.882 kb on - strand, within MMP_RS06130at 1172.951 kb on + strandat 1172.982 kb on - strandat 1173.017 kb on - strandat 1173.017 kb on - strandat 1173.017 kb on - strandat 1173.021 kb on + strandat 1173.023 kb on + strandat 1173.023 kb on + strandat 1173.023 kb on + strandat 1173.023 kb on + strandat 1173.023 kb on + strandat 1173.023 kb on + strandat 1173.023 kb on + strandat 1173.023 kb on + strandat 1173.024 kb on - strandat 1173.024 kb on - strandat 1173.025 kb on + strandat 1173.026 kb on - strandat 1173.027 kb on + strandat 1173.049 kb on - strandat 1173.050 kb on + strandat 1173.054 kb on - strandat 1173.137 kb on + strandat 1173.165 kb on + strandat 1173.262 kb on - strandat 1173.397 kb on - strandat 1173.920 kb on - strandat 1173.967 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
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1,171,541 + MMP_RS06120 0.84 -4.4
1,171,647 - -1.6
1,171,654 - -5.4
1,171,654 - -6.0
1,171,685 + -0.1
1,171,685 + +0.3
1,171,710 - +0.2
1,171,740 - -6.0
1,171,867 + -4.2
1,171,928 - -3.9
1,171,993 + -5.4
1,172,077 - -4.4
1,172,083 + -4.3
1,172,121 - -6.4
1,172,164 + -5.4
1,172,220 + -5.3
1,172,249 - -5.3
1,172,249 - -4.4
1,172,250 + -5.1
1,172,264 - -4.8
1,172,265 + -4.8
1,172,436 + -5.2
1,172,495 + -5.9
1,172,643 + MMP_RS06130 0.28 -5.3
1,172,756 - MMP_RS06130 0.53 -6.4
1,172,844 - MMP_RS06130 0.72 -5.1
1,172,844 - MMP_RS06130 0.72 -6.3
1,172,845 + MMP_RS06130 0.73 -2.9
1,172,882 - MMP_RS06130 0.81 -4.7
1,172,951 + -4.7
1,172,982 - -4.2
1,173,017 - -3.4
1,173,017 - -3.7
1,173,017 - -1.5
1,173,021 + -5.3
1,173,023 + -5.5
1,173,023 + -3.8
1,173,023 + -7.6
1,173,023 + -5.6
1,173,023 + -5.3
1,173,023 + -4.3
1,173,023 + -5.5
1,173,023 + -6.0
1,173,024 - -0.9
1,173,024 - -2.3
1,173,025 + -2.8
1,173,026 - -0.9
1,173,027 + -0.9
1,173,049 - +0.2
1,173,050 + +0.2
1,173,054 - -0.1
1,173,137 + -5.8
1,173,165 + -4.8
1,173,262 - -3.7
1,173,397 - -4.6
1,173,920 - -5.3
1,173,967 - -5.2

Or see this region's nucleotide sequence