Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06120 and MMP_RS06125 are separated by 142 nucleotides MMP_RS06125 and MMP_RS06130 are separated by 68 nucleotides MMP_RS06130 and MMP_RS06135 are separated by 190 nucleotides
MMP_RS06120: MMP_RS06120 - UPF0147 family protein, at 1,171,310 to 1,171,585
_RS06120
MMP_RS06125: MMP_RS06125 - ribose-5-phosphate isomerase RpiA, at 1,171,728 to 1,172,447
_RS06125
MMP_RS06130: MMP_RS06130 - peptidylprolyl isomerase, at 1,172,516 to 1,172,968
_RS06130
MMP_RS06135: MMP_RS06135 - methenyltetrahydromethanopterin cyclohydrolase, at 1,173,159 to 1,174,130
_RS06135
Position (kb)
1172
1173 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1171.541 kb on + strand, within MMP_RS06120 at 1171.647 kb on - strand at 1171.654 kb on - strand at 1171.654 kb on - strand at 1171.685 kb on + strand at 1171.685 kb on + strand at 1171.710 kb on - strand at 1171.740 kb on - strand at 1171.867 kb on + strand at 1171.928 kb on - strand at 1171.993 kb on + strand at 1172.077 kb on - strand at 1172.083 kb on + strand at 1172.121 kb on - strand at 1172.164 kb on + strand at 1172.220 kb on + strand at 1172.249 kb on - strand at 1172.249 kb on - strand at 1172.250 kb on + strand at 1172.264 kb on - strand at 1172.265 kb on + strand at 1172.436 kb on + strand at 1172.495 kb on + strand at 1172.643 kb on + strand, within MMP_RS06130 at 1172.756 kb on - strand, within MMP_RS06130 at 1172.844 kb on - strand, within MMP_RS06130 at 1172.844 kb on - strand, within MMP_RS06130 at 1172.845 kb on + strand, within MMP_RS06130 at 1172.882 kb on - strand, within MMP_RS06130 at 1172.951 kb on + strand at 1172.982 kb on - strand at 1173.017 kb on - strand at 1173.017 kb on - strand at 1173.017 kb on - strand at 1173.021 kb on + strand at 1173.023 kb on + strand at 1173.023 kb on + strand at 1173.023 kb on + strand at 1173.023 kb on + strand at 1173.023 kb on + strand at 1173.023 kb on + strand at 1173.023 kb on + strand at 1173.023 kb on + strand at 1173.024 kb on - strand at 1173.024 kb on - strand at 1173.025 kb on + strand at 1173.026 kb on - strand at 1173.027 kb on + strand at 1173.049 kb on - strand at 1173.050 kb on + strand at 1173.054 kb on - strand at 1173.137 kb on + strand at 1173.165 kb on + strand at 1173.262 kb on - strand at 1173.397 kb on - strand at 1173.920 kb on - strand at 1173.967 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse1; 20 generations remove 1,171,541 + MMP_RS06120 0.84 -4.4 1,171,647 - -1.6 1,171,654 - -5.4 1,171,654 - -6.0 1,171,685 + -0.1 1,171,685 + +0.3 1,171,710 - +0.2 1,171,740 - -6.0 1,171,867 + -4.2 1,171,928 - -3.9 1,171,993 + -5.4 1,172,077 - -4.4 1,172,083 + -4.3 1,172,121 - -6.4 1,172,164 + -5.4 1,172,220 + -5.3 1,172,249 - -5.3 1,172,249 - -4.4 1,172,250 + -5.1 1,172,264 - -4.8 1,172,265 + -4.8 1,172,436 + -5.2 1,172,495 + -5.9 1,172,643 + MMP_RS06130 0.28 -5.3 1,172,756 - MMP_RS06130 0.53 -6.4 1,172,844 - MMP_RS06130 0.72 -5.1 1,172,844 - MMP_RS06130 0.72 -6.3 1,172,845 + MMP_RS06130 0.73 -2.9 1,172,882 - MMP_RS06130 0.81 -4.7 1,172,951 + -4.7 1,172,982 - -4.2 1,173,017 - -3.4 1,173,017 - -3.7 1,173,017 - -1.5 1,173,021 + -5.3 1,173,023 + -5.5 1,173,023 + -3.8 1,173,023 + -7.6 1,173,023 + -5.6 1,173,023 + -5.3 1,173,023 + -4.3 1,173,023 + -5.5 1,173,023 + -6.0 1,173,024 - -0.9 1,173,024 - -2.3 1,173,025 + -2.8 1,173,026 - -0.9 1,173,027 + -0.9 1,173,049 - +0.2 1,173,050 + +0.2 1,173,054 - -0.1 1,173,137 + -5.8 1,173,165 + -4.8 1,173,262 - -3.7 1,173,397 - -4.6 1,173,920 - -5.3 1,173,967 - -5.2
Or see this region's nucleotide sequence